Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 4.1e-78 294.7 148 100.0
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 2.7e-21 105.9 201 35.8
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 8.6e-20 100.9 249 30.5
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 1.1e-19 100.5 69 69.6
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 9.5e-19 97.4 118 49.2
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 3.6e-18 95.5 217 31.3
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 1.4e-17 93.6 69 68.1
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 1.8e-17 93.2 69 66.7
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 3.1e-17 92.4 222 30.6
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 1.2e-16 90.5 89 55.1
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 3.4e-16 89.0 69 62.3
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 4.4e-16 88.6 69 62.3
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 4.4e-16 88.6 250 28.4
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 7.5e-16 87.8 70 64.3
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 7.5e-16 87.8 247 27.9
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 7.5e-16 87.8 70 65.7
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 9.9e-16 87.4 69 65.2
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 9.9e-16 87.4 71 62.0
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.3e-15 87.0 245 28.2
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 1.7e-15 86.7 70 64.3
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 2.2e-15 86.3 87 57.5
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 2.2e-15 86.3 250 27.2
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 4.9e-15 85.1 99 51.5
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 6.4e-15 84.7 71 60.6
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 8.3e-15 84.3 70 60.0
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 8.3e-15 84.3 65 63.1
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.1e-14 84.0 70 62.9
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 1.1e-14 84.0 70 62.9
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.4e-14 83.6 70 60.0
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 1.4e-14 83.6 70 62.9
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.9e-14 83.2 75 60.0
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 1.9e-14 83.2 70 61.4
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 4.1e-14 82.0 70 62.9
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 5.4e-14 81.6 70 60.0
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 5.4e-14 81.6 94 48.9
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 5.4e-14 81.6 70 57.1
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 5.4e-14 81.6 70 60.0
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 5.4e-14 81.6 70 58.6
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 5.4e-14 81.6 69 59.4
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 5.4e-14 81.6 70 58.6
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 9.2e-14 80.9 94 48.9
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 9.2e-14 80.9 69 58.0
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 9.2e-14 80.9 68 60.3
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 1.2e-13 80.5 95 44.2
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 1.2e-13 80.5 250 26.8
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 1.2e-13 80.5 88 51.1
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 1.2e-13 80.5 70 57.1
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 1.2e-13 80.5 70 57.1
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 1.2e-13 80.5 70 57.1
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 1.6e-13 80.1 69 58.0
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 2.1e-13 79.7 127 42.5
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 2.7e-13 79.3 82 51.2
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 2.7e-13 79.3 82 51.2
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 2.7e-13 79.3 82 51.2
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 2.7e-13 79.3 82 51.2
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 2.7e-13 79.3 82 51.2
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 3.5e-13 79.0 94 46.8
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 3.5e-13 79.0 70 57.1
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 3.5e-13 79.0 70 57.1
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 3.5e-13 79.0 124 40.3
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 4.6e-13 78.6 70 55.7
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 4.6e-13 78.6 70 60.0
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 4.6e-13 78.6 69 59.4
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 6.0e-13 78.2 69 58.0
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 7.8e-13 77.8 70 55.7
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 7.8e-13 77.8 70 55.7
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 7.8e-13 77.8 95 40.0
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 1.0e-12 77.4 69 56.5
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 1.3e-12 77.0 88 50.0
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 1.3e-12 77.0 70 55.7
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 1.3e-12 77.0 70 58.6
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 1.3e-12 77.0 69 58.0
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 2.3e-12 76.3 70 58.6
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 2.3e-12 76.3 71 53.5
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 3.0e-12 75.9 70 57.1
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 3.0e-12 75.9 70 58.6
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 5.1e-12 75.1 70 57.1
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 5.1e-12 75.1 70 57.1
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 5.1e-12 75.1 70 57.1
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 5.1e-12 75.1 70 57.1
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 6.6e-12 74.7 70 54.3
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 6.6e-12 74.7 70 51.4
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.1e-11 73.9 65 60.0
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.1e-11 73.9 70 57.1
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 1.9e-11 73.2 70 55.7
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 3.3e-11 72.4 69 58.0
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 3.3e-11 72.4 70 55.7
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 5.6e-11 71.6 70 55.7
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 7.3e-11 71.2 69 56.5
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 7.3e-11 71.2 70 52.9
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 7.3e-11 71.2 70 52.9
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 7.3e-11 71.2 70 52.9
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 1.2e-10 70.5 69 56.5
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 1.2e-10 70.5 70 55.7
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 2.1e-10 69.7 70 52.9
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 3.6e-10 68.9 70 48.6
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 4.7e-10 68.6 70 48.6
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.8e-09 66.6 69 55.1
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 5.2e-09 65.1 72 40.3
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 8.9e-09 64.3 72 43.1
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 1.2e-08 63.9 70 51.4
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 5.8e-08 61.6 104 35.6
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 7.6e-08 61.2 73 45.2
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 3.8e-07 58.9 40 62.5
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.4e-06 57.0 40 60.0
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 1.9e-06 56.6 71 38.0
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 1.9e-06 56.6 42 57.1
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 2.4e-06 56.2 42 57.1
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 2.4e-06 56.2 42 57.1
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 3.2e-06 55.8 43 55.8


User provided reference genes

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