Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 0.0e+00 2092.4 1060 100.0
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 0.0e+00 1538.5 1067 76.0
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 0.0e+00 1502.3 1086 72.9
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 0.0e+00 1354.7 1092 68.3
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1100.1 1142 54.7
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.4e-289 1000.0 1102 52.2
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 3.6e-285 985.3 1117 51.9
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 4.7e-285 984.9 1143 50.7
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 6.1e-285 984.6 1125 51.1
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 8.0e-285 984.2 1117 51.9
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 1.4e-284 983.4 1128 50.5
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.3e-282 976.9 1101 51.2
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 4.8e-282 974.9 1125 50.9
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 8.3e-282 974.2 1130 51.0
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 4.1e-281 971.8 1109 50.2
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.6e-280 969.9 1125 50.5
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 1.6e-280 969.9 1102 50.5
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.9e-279 965.7 1121 50.8
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 6.5e-279 964.5 1116 50.0
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.5e-278 963.4 1128 50.9
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 3.2e-278 962.2 1082 52.6
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 9.4e-278 960.7 1120 50.0
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.1e-277 959.5 1155 49.1
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 6.1e-277 958.0 1097 51.0
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 6.1e-277 958.0 1109 50.1
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.5e-275 953.4 1117 50.0
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 4.4e-275 951.8 1120 50.2
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 7.5e-275 951.0 1124 49.9
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 9.8e-275 950.7 1143 49.6
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.2e-274 949.5 1114 50.1
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.7e-274 948.7 1139 49.7
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 4.8e-274 948.3 1117 49.6
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 8.3e-274 947.6 1104 49.4
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 2.0e-272 943.0 1077 51.4
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 3.8e-271 938.7 1150 49.3
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 5.0e-271 938.3 1100 49.3
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.9e-270 936.4 1152 47.9
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 7.2e-270 934.5 1108 51.0
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.8e-265 919.8 1116 48.7
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 3.9e-263 912.1 1076 49.3
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.5e-262 909.4 1033 51.6
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 2.5e-262 909.4 1100 48.8
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 1.6e-261 906.7 1102 48.7
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.6e-261 905.6 1092 48.8
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 1.8e-260 903.3 1101 48.0
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 6.4e-258 894.8 1102 48.2
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.1e-257 894.0 1102 48.5
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 3.2e-257 892.5 1102 47.6
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 5.4e-257 891.7 1122 48.4
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 3.5e-256 889.0 1137 47.2
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 5.0e-255 885.2 1102 47.5
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 5.6e-254 881.7 1094 46.9
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.1e-252 877.5 1112 47.8
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.4e-252 877.1 1176 45.9
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 3.1e-252 875.9 999 51.4
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 6.4e-250 868.2 1124 46.6
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.4e-249 867.1 1108 46.5
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.4e-249 867.1 1085 47.8
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.4e-249 866.3 1085 48.0
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 7.8e-248 861.3 1119 47.6
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.5e-246 856.3 1113 47.5
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 4.3e-246 855.5 1099 47.5
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.7e-245 852.0 994 51.2
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.1e-244 850.9 1122 46.3
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.0e-243 846.7 1134 45.9
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 9.9e-243 844.3 1084 46.2
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 2.1e-240 836.6 1114 46.7
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.3e-239 833.2 1065 46.0
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.9e-239 832.4 1080 45.9
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 8.6e-239 831.2 1084 46.9
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 3.3e-238 829.3 1126 45.1
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 5.6e-238 828.6 1082 46.3
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.6e-237 827.0 1059 46.9
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 3.6e-237 825.9 1095 44.8
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.4e-236 823.9 1085 44.8
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 5.2e-236 822.0 1157 45.6
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 6.8e-236 821.6 1079 45.3
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 6.8e-236 821.6 1079 45.3
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 2.6e-235 819.7 1126 45.2
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 4.9e-234 815.5 1084 47.9
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 6.4e-234 815.1 1077 45.4
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 6.4e-234 815.1 941 51.8
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.4e-233 813.9 1101 46.2
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 1.4e-233 813.9 1078 45.4
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 5.4e-233 812.0 1079 45.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.6e-232 810.4 1096 45.5
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 6.0e-232 808.5 958 48.9
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 5.1e-231 805.4 1130 44.2
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 6.6e-231 805.1 1081 45.2
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 2.1e-229 800.0 1099 45.1
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 2.8e-229 799.7 1094 44.2
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.8e-228 797.0 1104 44.5
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.5e-227 793.9 1088 45.7
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 3.4e-227 792.7 1088 45.7
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 1.3e-226 790.8 1093 45.9
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 2.2e-226 790.0 1130 44.0
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 2.9e-226 789.6 1110 43.9
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 6.4e-226 788.5 1109 44.3
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.6e-224 783.9 1068 44.2
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.7e-224 783.1 921 49.9
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 7.9e-224 781.6 1110 43.2
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 4.3e-222 775.8 1120 43.8
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.4e-217 760.0 1041 44.9
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 4.2e-217 759.2 1107 43.3
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.9e-210 736.5 649 62.4
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.4e-209 734.2 869 50.4
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 2.7e-208 729.9 682 60.1
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 2.5e-206 723.4 778 54.2
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 2.9e-202 709.9 790 52.7
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 6.7e-199 698.7 1101 39.9
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.0e-194 682.6 691 55.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 6.5e-194 682.2 687 55.5
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.2e-187 661.4 812 48.6
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.7e-186 657.5 677 56.0
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 7.9e-184 648.7 444 74.1
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.7e-181 641.0 442 72.4
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 6.3e-181 639.0 838 46.8
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.1e-180 638.3 529 63.1
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 1.7e-178 630.9 913 44.6
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 5.3e-172 609.4 1094 38.6
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.7e-170 604.4 884 43.4
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 1.5e-169 601.3 639 54.9
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 2.7e-168 597.0 855 42.3
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.4e-156 558.1 813 46.1
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 2.1e-152 544.3 685 49.6
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 8.3e-149 532.3 940 39.0
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 4.0e-127 460.3 664 42.3
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.3e-125 455.3 268 87.7
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.3e-125 455.3 268 87.7
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.4e-124 451.8 662 42.4
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.4e-108 398.7 725 38.3
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 2.0e-102 378.3 328 57.6
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.3e-88 332.4 593 38.8
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.6e-88 332.0 593 38.6
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.5e-86 323.9 206 80.6
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.8e-85 320.9 423 45.9
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.0e-61 243.0 226 54.9
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.8e-50 205.7 142 75.4
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 5.7e-49 200.7 793 27.5
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.6e-46 192.6 652 28.8
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 4.2e-44 184.5 589 31.1
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 6.3e-40 170.6 132 62.9
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 9.2e-39 166.8 204 52.5
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 2.5e-36 158.7 92 87.0
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 1.1e-31 143.3 87 80.5
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 9.2e-31 140.2 160 53.8
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.9e-21 108.2 190 31.6
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 3.3e-20 105.1 375 28.0
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 5.2e-18 97.8 67 67.2
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 6.2e-11 74.3 144 34.7
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.8e-10 72.8 344 26.7
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.7e-08 66.2 166 32.5
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 4.9e-08 64.7 111 32.4
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 4.1e-07 61.6 149 26.8
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 7.8e-06 57.4 193 30.1


User provided reference genes

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