Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 7.9e-186 653.7 338 100.0
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 3.4e-120 435.6 300 76.7
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 2.3e-116 422.9 280 77.9
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 3.9e-108 395.6 305 69.8
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 4.0e-105 385.6 298 68.8
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 6.0e-101 371.7 300 65.3
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.0e-100 370.9 292 66.1
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 5.1e-100 368.6 253 73.1
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.8e-97 360.1 301 64.1
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 2.3e-97 359.8 287 64.1
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 2.3e-97 359.8 287 64.1
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 2.3e-97 359.8 285 64.6
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 4.0e-97 359.0 276 68.5
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 8.9e-97 357.8 295 63.4
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 1.2e-96 357.5 265 70.2
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 2.0e-96 356.7 284 66.9
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 3.4e-96 355.9 293 64.2
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 3.4e-96 355.9 297 64.3
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 5.8e-96 355.1 311 60.5
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 7.6e-96 354.8 282 65.2
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 9.9e-96 354.4 306 62.7
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 9.9e-96 354.4 254 70.5
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 1.3e-95 354.0 298 63.4
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 2.2e-95 353.2 307 64.5
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 8.4e-95 351.3 292 63.4
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.1e-94 350.9 288 61.8
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.2e-94 349.4 262 65.3
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 3.2e-94 349.4 259 67.2
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 3.2e-94 349.4 263 69.6
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 7.1e-94 348.2 278 64.4
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 4.6e-93 345.5 263 69.6
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 6.0e-93 345.1 326 58.6
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 6.0e-93 345.1 262 69.5
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 7.8e-93 344.7 285 64.2
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.3e-92 344.0 288 60.8
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.3e-92 344.0 292 62.3
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 2.3e-92 343.2 263 64.6
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.0e-92 342.8 262 64.9
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 5.1e-92 342.0 250 68.0
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 6.6e-92 341.7 250 69.2
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 1.1e-91 340.9 275 65.8
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 1.1e-91 340.9 307 59.3
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 4.3e-91 339.0 291 60.5
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 7.3e-91 338.2 287 63.4
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.2e-90 337.4 310 58.1
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.7e-90 335.5 267 65.5
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 6.2e-90 335.1 272 63.6
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 8.1e-90 334.7 260 69.6
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.4e-89 334.0 263 65.8
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 1.8e-89 333.6 248 66.5
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.8e-89 333.6 300 59.3
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 2.4e-89 333.2 282 62.8
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 2.4e-89 333.2 267 62.2
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 2.4e-89 333.2 267 62.2
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 4.0e-89 332.4 243 68.7
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 6.9e-89 331.6 288 61.8
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 2.0e-88 330.1 301 59.5
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 9.9e-88 327.8 248 64.9
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 1.7e-87 327.0 275 64.4
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 3.8e-87 325.9 285 60.4
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 4.9e-87 325.5 284 59.2
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 8.4e-87 324.7 281 63.3
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 1.4e-86 323.9 302 58.9
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 1.9e-86 323.6 228 68.4
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.9e-86 323.6 248 64.5
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 1.9e-86 323.6 264 61.4
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 2.4e-86 323.2 327 55.0
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 2.4e-86 323.2 290 60.7
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 4.2e-86 322.4 320 54.1
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 9.3e-86 321.2 302 57.6
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.1e-85 320.1 330 53.0
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 2.1e-85 320.1 275 65.5
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 2.7e-85 319.7 243 66.3
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 4.6e-85 318.9 263 64.3
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 4.6e-85 318.9 264 62.1
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.7e-84 317.0 285 59.6
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.3e-84 316.6 251 61.8
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 2.3e-84 316.6 287 58.9
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 3.9e-84 315.8 286 59.4
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 5.1e-84 315.5 285 59.3
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 8.7e-84 314.7 287 58.5
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 8.7e-84 314.7 277 61.4
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 1.1e-83 314.3 291 58.1
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 3.3e-83 312.8 281 59.8
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 3.3e-83 312.8 237 65.8
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 5.6e-83 312.0 251 62.2
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.8e-82 309.7 250 60.8
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 1.2e-80 304.3 230 66.1
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.5e-80 303.9 288 57.6
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 2.6e-80 303.1 310 54.5
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 7.6e-80 301.6 263 61.6
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.8e-76 290.4 371 48.0
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.8e-74 283.1 416 43.0
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 8.1e-74 281.6 200 68.5
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 3.1e-73 279.6 296 49.0
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 2.0e-72 276.9 228 60.5
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 2.4e-70 270.0 199 67.8
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 5.5e-70 268.9 232 59.9
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 6.7e-68 261.9 248 52.4
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 5.6e-67 258.8 275 50.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 1.6e-66 257.3 288 50.3
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 6.2e-66 255.4 185 67.6
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 2.6e-64 250.0 211 64.0
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 3.2e-62 243.0 212 59.0
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 9.3e-62 241.5 229 60.3
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 2.1e-61 240.4 279 50.2
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 6.0e-61 238.8 234 54.7
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 7.4e-59 231.9 270 47.0
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 9.7e-59 231.5 258 49.6
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.2e-54 216.5 286 47.6
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 5.5e-54 215.7 228 59.2
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 7.9e-53 211.8 229 52.4
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.3e-51 206.1 190 60.0
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 1.2e-48 198.0 139 74.8
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.5e-48 197.6 263 43.3
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 5.9e-48 195.7 172 59.3
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 7.2e-46 188.7 260 41.9
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 8.8e-44 181.8 142 59.9
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 7.4e-43 178.7 250 42.0
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.2e-42 177.2 161 58.4
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 3.0e-36 156.8 119 68.9
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.0e-23 115.2 71 71.8
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 3.2e-22 110.2 79 60.8
Lsat_1_v5_gn_9_32780 Lactuca sativa HOM05D000379 ORTHO05D024309 5.4e-09 66.2 110 35.5


User provided reference genes

Program Settings