Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 6.3e-120 434.1 217 100.0
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 2.6e-73 279.3 219 66.7
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 8.3e-72 274.2 218 69.3
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 1.1e-42 177.6 211 46.4
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 4.0e-42 175.6 211 46.4
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 2.2e-40 169.9 218 46.8
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 2.9e-40 169.5 211 47.4
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 2.4e-39 166.4 219 45.7
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 7.1e-39 164.9 229 44.1
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 1.0e-37 161.0 218 40.8
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 1.3e-37 160.6 219 43.8
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 2.3e-37 159.8 226 41.2
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 5.1e-37 158.7 217 42.9
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 5.1e-37 158.7 212 45.3
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 6.7e-37 158.3 224 42.0
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 6.7e-37 158.3 224 42.0
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 8.7e-37 157.9 211 44.1
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 3.3e-36 156.0 235 40.4
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 7.4e-36 154.8 220 42.7
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 9.6e-36 154.5 220 43.2
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 2.1e-35 153.3 217 43.8
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 8.1e-35 151.4 230 40.9
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 8.1e-35 151.4 211 43.1
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 8.1e-35 151.4 215 40.5
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 1.4e-34 150.6 185 48.6
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.4e-34 150.6 218 42.7
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 1.8e-34 150.2 219 43.4
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 3.1e-34 149.4 221 41.2
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 6.9e-34 148.3 221 45.7
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 1.2e-33 147.5 219 42.9
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 1.2e-33 147.5 219 42.9
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 2.0e-33 146.7 217 44.7
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 2.6e-33 146.4 219 42.0
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 2.6e-33 146.4 187 45.5
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 3.4e-33 146.0 215 42.3
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 5.8e-33 145.2 215 41.9
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 7.6e-33 144.8 216 39.8
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 1.0e-32 144.4 224 39.7
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 2.2e-32 143.3 213 43.7
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 2.2e-32 143.3 217 41.9
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 6.5e-32 141.7 219 41.6
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 8.4e-32 141.4 214 42.5
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 8.4e-32 141.4 214 42.5
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 8.4e-32 141.4 217 42.4
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 1.4e-31 140.6 217 39.6
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 2.5e-31 139.8 216 41.2
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 4.2e-31 139.0 227 38.3
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 9.3e-31 137.9 221 40.3
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 1.6e-30 137.1 211 41.7
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 2.1e-30 136.7 164 45.7
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 2.7e-30 136.3 219 39.7
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 2.7e-30 136.3 217 38.7
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 2.7e-30 136.3 220 40.5
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 4.6e-30 135.6 223 42.2
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 7.9e-30 134.8 220 39.1
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 1.0e-29 134.4 159 49.1
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 1.0e-29 134.4 219 42.9
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 1.3e-29 134.0 218 40.4
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 1.3e-29 134.0 218 40.4
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 1.8e-29 133.7 217 40.1
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 2.3e-29 133.3 183 44.3
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 2.3e-29 133.3 212 40.6
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 3.0e-29 132.9 220 38.2
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 3.9e-29 132.5 219 38.8
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 8.7e-29 131.3 220 37.7
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 1.5e-28 130.6 204 42.2
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 5.7e-28 128.6 220 37.7
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 5.7e-28 128.6 220 40.5
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 9.6e-28 127.9 217 39.6
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 1.3e-27 127.5 220 38.2
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 1.6e-27 127.1 222 39.2
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 2.1e-27 126.7 208 38.0
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 2.8e-27 126.3 216 39.4
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 4.8e-27 125.6 224 38.4
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 6.3e-27 125.2 208 39.4
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 8.2e-27 124.8 220 39.1
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 5.3e-26 122.1 216 40.3
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 9.0e-26 121.3 236 36.0
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 2.0e-25 120.2 215 39.1
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 5.9e-25 118.6 221 38.0
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 7.6e-25 118.2 221 38.0
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 1.0e-24 117.9 145 44.1
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.7e-24 117.1 217 39.6
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 1.9e-23 113.6 219 37.9
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 2.5e-23 113.2 218 38.1
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 2.1e-22 110.2 224 36.6
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 3.6e-22 109.4 222 32.4
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 3.6e-22 109.4 219 39.3
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 3.9e-21 105.9 203 34.5
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 5.1e-21 105.5 215 37.2
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.5e-20 103.2 221 31.2
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 7.4e-20 101.7 220 35.9
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 9.7e-20 101.3 208 35.6
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 3.1e-18 96.3 181 36.5
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 1.5e-17 94.0 209 34.4
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 1.5e-17 94.0 207 32.9
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 2.0e-17 93.6 208 32.2
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 2.6e-17 93.2 209 35.4
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 3.4e-17 92.8 198 32.8
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 3.4e-17 92.8 209 34.4
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 1.0e-16 91.3 209 34.9
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.0e-16 91.3 205 32.2
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.0e-16 91.3 205 32.2
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 1.7e-16 90.5 193 33.2
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 2.2e-16 90.1 202 31.2
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 2.9e-16 89.7 109 45.0
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 2.9e-16 89.7 204 30.9
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 5.0e-16 89.0 108 45.4
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 4.2e-15 85.9 218 29.8
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 2.3e-13 80.1 160 31.9
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 3.0e-13 79.7 216 32.9
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 3.0e-13 79.7 216 32.9
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 5.7e-12 75.5 218 27.5
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 1.4e-10 70.9 197 33.5
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 1.8e-10 70.5 243 28.8
SalBow8G4867 Salvia bowleyana HOM05D006157 ORTHO05D007826 7.7e-09 65.1 34 79.4
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 3.8e-08 62.8 157 33.8
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 1.4e-07 60.8 153 33.3
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.5e-07 60.1 40 55.0
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 5.5e-07 58.9 41 56.1
Zm00001eb100900 Zea mays HOM05D006157 ORTHO05D007826 7.2e-07 58.5 35 65.7
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 4.7e-06 55.8 224 24.6


User provided reference genes

Program Settings