Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.7e-162 575.9 275 100.0
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.4e-110 401.7 254 76.0
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.3e-98 363.6 253 70.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.1e-97 360.5 256 67.2
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 4.3e-97 358.6 248 71.8
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.1e-95 352.4 251 66.5
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 7.5e-86 321.2 250 62.4
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.4e-84 316.2 248 61.3
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 7.1e-84 314.7 272 56.6
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.6e-83 313.5 251 60.6
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.1e-83 313.2 257 61.1
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.1e-83 313.2 256 60.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 3.5e-83 312.4 252 60.3
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.7e-82 310.1 250 60.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.9e-82 308.9 250 61.6
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 5.1e-82 308.5 255 60.0
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 6.6e-82 308.1 250 60.8
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.5e-81 307.0 245 61.6
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.5e-81 306.2 249 60.6
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.5e-81 306.2 251 60.2
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 4.3e-81 305.4 262 59.9
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.3e-81 305.4 251 57.0
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.6e-81 305.1 251 57.4
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.2e-80 303.9 251 57.0
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.1e-80 303.1 250 60.4
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 8.1e-80 301.2 258 57.8
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.8e-79 300.1 250 60.4
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.8e-79 300.1 257 56.8
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.3e-79 299.7 250 60.4
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 2.3e-79 299.7 251 59.0
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 5.2e-79 298.5 253 57.7
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 6.8e-79 298.1 256 58.6
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 8.9e-79 297.7 246 60.2
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 2.0e-78 296.6 190 71.6
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.4e-78 295.8 185 72.4
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 3.4e-78 295.8 252 57.9
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 7.6e-78 294.7 251 58.2
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 7.6e-78 294.7 251 56.6
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.3e-77 293.9 250 58.4
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.7e-77 293.5 253 59.3
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.7e-77 293.5 253 58.1
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 8.4e-77 291.2 254 55.1
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 8.4e-77 291.2 250 59.2
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.1e-76 290.8 246 57.7
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.9e-76 290.0 199 67.8
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 2.4e-76 289.7 252 57.1
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 9.2e-76 287.7 246 58.9
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.2e-75 287.3 252 57.9
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.6e-75 287.0 235 60.4
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.5e-75 285.8 246 56.1
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 4.6e-75 285.4 258 54.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 4.6e-75 285.4 256 57.4
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 6.0e-75 285.0 258 56.6
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.0e-74 284.3 252 56.3
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 2.3e-74 283.1 234 59.4
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.3e-74 283.1 171 73.7
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 3.0e-74 282.7 252 55.6
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 3.0e-74 282.7 252 56.0
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.0e-74 282.7 257 58.0
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 3.9e-74 282.3 256 58.6
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 5.1e-74 282.0 257 58.4
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 5.1e-74 282.0 246 58.9
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 5.1e-74 282.0 250 54.0
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.5e-73 280.4 253 55.7
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.9e-73 280.0 219 62.6
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 2.5e-73 279.6 251 54.2
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.5e-73 279.6 250 55.6
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.5e-73 279.6 246 56.1
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.5e-73 279.6 174 72.4
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.5e-73 279.6 174 72.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 3.3e-73 279.3 253 54.9
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.3e-73 279.3 175 72.6
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 7.3e-73 278.1 252 55.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.3e-73 278.1 214 65.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 9.6e-73 277.7 214 65.0
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 9.6e-73 277.7 175 72.0
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.2e-72 277.3 236 57.6
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-72 277.3 251 56.2
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 1.6e-72 276.9 186 69.4
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.6e-72 276.9 249 58.6
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.6e-72 276.9 171 73.1
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.1e-72 276.6 250 55.6
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.1e-72 276.6 252 55.6
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.1e-72 276.6 254 54.7
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 2.8e-72 276.2 217 63.1
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 3.6e-72 275.8 250 53.2
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.7e-72 275.4 251 55.8
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.7e-72 275.4 210 65.2
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 6.2e-72 275.0 250 53.2
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 6.2e-72 275.0 261 54.0
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 6.2e-72 275.0 252 57.5
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 6.2e-72 275.0 174 73.6
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 8.1e-72 274.6 255 52.9
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-71 274.2 254 55.1
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.1e-71 274.2 254 55.1
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 4.0e-71 272.3 252 53.2
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 5.2e-71 271.9 171 74.3
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.2e-71 271.9 171 74.3
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 6.8e-71 271.6 254 51.6
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-70 270.8 277 51.6
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 5.8e-70 268.5 253 53.4
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 7.6e-70 268.1 252 52.8
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.6e-70 268.1 171 73.1
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-69 267.3 173 70.5
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-69 267.3 252 53.2
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-69 266.9 173 70.5
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.9e-69 266.2 170 70.6
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 3.8e-69 265.8 210 61.9
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 3.8e-69 265.8 250 52.0
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-68 264.2 251 52.2
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.4e-68 263.8 244 53.3
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.9e-68 263.5 172 68.6
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 2.4e-68 263.1 285 50.5
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 5.4e-68 261.9 172 65.1
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 7.1e-68 261.5 171 71.9
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.9e-66 255.8 249 52.6
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-65 254.2 177 63.3
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 6.2e-64 248.4 222 58.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.8e-63 246.9 144 77.8
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 9.0e-63 244.6 255 51.8
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 7.6e-62 241.5 246 52.8
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 9.3e-60 234.6 219 54.3
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.2e-59 234.2 217 56.2
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.7e-59 233.0 142 76.1
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.0e-58 231.1 216 54.2
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.1e-58 228.8 251 49.0
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 3.3e-57 226.1 233 51.1
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 3.3e-57 226.1 172 59.9
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 5.6e-57 225.3 138 73.2
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.1e-56 223.4 174 58.0
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.5e-54 217.2 216 49.5
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 4.5e-54 215.7 218 50.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 9.9e-54 214.5 165 58.2
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 8.4e-53 211.5 173 56.6
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.1e-52 211.1 168 57.7
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.4e-52 210.7 250 47.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.0e-51 205.3 147 61.2
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.9e-50 202.6 258 44.2
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.1e-49 201.1 251 43.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.6e-49 198.7 172 52.3
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 9.6e-49 198.0 177 57.1
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.7e-48 196.1 252 42.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.8e-48 195.7 144 63.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 8.4e-45 184.9 115 73.0
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 9.0e-31 138.3 94 64.9
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-30 137.5 142 52.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 2.0e-30 137.1 91 65.9
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 9.4e-28 128.3 83 72.3
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 3.0e-26 123.2 236 29.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.5e-25 120.2 95 61.1
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.2e-24 117.1 137 40.1
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 8.2e-24 115.2 79 60.8
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 9.1e-23 111.7 77 68.8
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-22 110.9 138 45.7
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 5.5e-20 102.4 63 71.4
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-19 100.5 71 64.8
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.7e-17 91.7 67 61.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.3e-16 91.3 57 68.4
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.2e-12 76.6 70 52.9
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.6e-11 74.3 48 66.7
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.6e-11 73.2 51 62.7
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.1e-09 68.2 125 37.6
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-09 67.4 51 58.8
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.0e-09 67.4 51 58.8
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 7.5e-09 65.5 39 71.8
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.7e-06 57.0 43 58.1


User provided reference genes

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