Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.0e-250 868.6 433 100.0
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.8e-172 609.0 445 70.8
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.6e-167 593.2 447 68.7
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.5e-141 506.9 476 56.5
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.5e-133 480.3 405 60.2
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.5e-130 469.2 413 62.0
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 5.1e-129 465.3 402 61.9
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 3.6e-127 459.1 465 55.5
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.1e-126 457.6 461 53.1
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.1e-123 447.6 480 54.0
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.7e-122 443.0 407 61.2
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 6.0e-122 441.8 397 58.9
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 3.0e-121 439.5 405 58.5
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 3.0e-121 439.5 403 61.0
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 5.1e-121 438.7 404 58.7
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 5.1e-121 438.7 398 60.1
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 8.7e-121 438.0 405 60.2
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 8.7e-121 438.0 402 58.2
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.1e-120 437.6 402 60.9
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 5.6e-120 435.3 418 58.4
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 7.4e-120 434.9 398 59.8
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.3e-119 434.1 398 59.0
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 2.1e-119 433.3 412 57.8
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.1e-119 433.3 398 59.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 6.2e-119 431.8 396 58.1
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 8.1e-119 431.4 401 58.4
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 6.9e-118 428.3 397 60.7
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 6.9e-118 428.3 409 59.9
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.5e-117 425.6 479 53.0
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 5.8e-117 425.2 408 59.6
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.7e-116 423.7 407 59.7
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.9e-116 422.9 416 58.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-115 421.0 414 57.2
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.1e-115 421.0 416 57.9
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 3.2e-115 419.5 403 57.6
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 4.2e-115 419.1 416 57.5
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 3.5e-114 416.0 407 57.0
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.8e-113 413.7 428 55.6
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.8e-113 413.7 477 50.3
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 3.0e-113 412.9 401 56.1
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.0e-113 412.9 404 58.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.9e-113 412.5 402 56.5
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 6.7e-113 411.8 401 56.9
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.3e-111 407.5 391 58.3
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 1.6e-111 407.1 386 57.5
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.7e-111 406.0 416 55.0
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.4e-110 404.1 419 55.4
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.8e-110 403.7 419 55.4
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 9.0e-110 401.4 406 55.9
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.2e-109 401.0 408 56.1
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.5e-109 400.6 461 49.5
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.5e-109 399.1 419 55.1
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 5.8e-109 398.7 396 56.8
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.3e-108 397.5 435 54.3
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.9e-108 396.4 423 55.3
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 6.5e-108 395.2 401 54.9
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 8.4e-108 394.8 390 55.6
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.1e-107 394.4 414 54.3
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.9e-107 393.7 398 55.5
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 3.2e-107 392.9 406 53.9
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 3.2e-107 392.9 398 55.3
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 5.5e-107 392.1 411 54.3
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 9.3e-107 391.3 418 54.3
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.6e-106 390.6 415 53.5
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.6e-106 390.6 463 49.5
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 8.7e-105 384.8 408 53.4
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 7.4e-104 381.7 395 53.7
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.3e-103 380.9 393 55.7
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.3e-103 380.9 405 53.8
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.3e-103 380.9 396 54.5
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.8e-102 377.1 405 53.6
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 2.4e-102 376.7 386 53.9
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 1.2e-101 374.4 413 53.3
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.2e-101 374.4 436 50.7
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.5e-101 374.0 408 52.0
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.7e-100 370.5 431 49.9
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.2e-100 370.2 430 50.7
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 3.8e-100 369.4 474 48.3
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.1e-99 367.9 424 50.2
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.5e-99 366.7 417 50.8
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 2.5e-99 366.7 394 52.3
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.4e-97 360.9 385 54.0
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 3.9e-97 359.4 385 54.3
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 6.7e-97 358.6 413 51.8
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.5e-96 357.5 395 50.4
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.5e-96 357.5 392 53.6
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 2.5e-96 356.7 437 47.1
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 5.7e-96 355.5 406 48.5
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.1e-94 351.3 400 52.2
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.8e-94 350.5 410 48.5
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 4.1e-94 349.4 404 52.5
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.4e-91 340.9 369 53.1
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.1e-90 337.0 473 44.2
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.0e-89 334.7 419 45.8
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.4e-89 334.3 339 55.8
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 2.3e-89 333.6 199 80.9
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.0e-89 333.2 425 44.0
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 6.7e-89 332.0 346 54.9
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.1e-88 331.3 465 45.8
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 4.4e-88 329.3 488 43.0
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 8.2e-87 325.1 385 46.5
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 4.1e-86 322.8 388 50.8
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 4.1e-86 322.8 473 43.3
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.5e-83 314.3 331 53.5
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 2.5e-83 313.5 401 45.6
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.2e-83 313.2 397 45.3
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 2.1e-82 310.5 408 45.1
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 2.7e-82 310.1 412 44.9
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.0e-81 308.1 373 50.4
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.1e-80 304.7 442 42.8
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 2.8e-79 300.1 411 45.0
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 1.8e-78 297.4 416 44.2
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.1e-78 296.2 304 54.6
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 2.6e-77 293.5 412 45.6
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 5.9e-77 292.4 405 44.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.7e-76 290.8 392 43.9
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 2.9e-76 290.0 407 44.0
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 6.5e-76 288.9 192 71.9
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 8.5e-76 288.5 405 43.5
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.5e-75 287.7 450 43.1
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.6e-74 284.3 450 42.9
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.4e-73 281.2 205 67.3
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 4.8e-71 272.7 402 42.0
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 4.8e-71 272.7 408 44.4
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.2e-66 258.1 354 43.2
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.2e-66 258.1 396 39.6
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 6.8e-65 252.3 216 58.3
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 8.8e-65 251.9 404 37.9
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.1e-62 245.0 393 37.7
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-60 237.7 422 39.1
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-56 224.6 422 37.0
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.8e-54 217.6 422 35.5
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 2.4e-54 217.2 420 34.8
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 5.6e-51 206.1 164 59.8
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.2e-50 202.6 403 34.5
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.8e-49 201.1 432 32.9
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 5.2e-49 199.5 153 65.4
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 5.2e-49 199.5 153 65.4
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.3e-47 194.9 371 36.1
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.3e-47 192.2 384 35.7
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.4e-41 174.9 440 32.5
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.7e-39 166.8 174 52.3
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.2e-38 163.7 161 52.2
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 9.2e-38 162.2 161 52.2
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.1e-35 155.2 389 31.1
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 5.6e-35 152.9 244 42.2
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 5.6e-35 152.9 244 42.2
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 8.1e-34 149.1 158 44.9
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.8e-33 147.9 108 62.0
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.8e-32 142.9 238 40.8
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.4e-31 139.4 151 51.0
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.6e-26 124.8 246 37.0
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 3.0e-20 104.0 258 31.8
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 6.0e-13 79.7 79 51.9
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 1.4e-09 68.6 122 36.9
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.6e-08 62.8 110 30.9


User provided reference genes

Program Settings