Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 2.3e-191 672.2 364 100.0
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 9.5e-153 543.9 333 90.1
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 3.7e-149 531.9 342 86.3
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.5e-145 520.0 335 77.3
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 3.1e-143 512.3 334 81.4
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 7.5e-142 507.7 341 75.4
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.1e-140 503.8 343 75.5
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.1e-140 501.9 338 71.6
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 9.2e-140 500.7 339 71.1
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 4.6e-139 498.4 342 73.1
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 7.8e-139 497.7 341 74.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-138 496.5 342 69.6
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.3e-138 496.1 339 73.2
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 3.0e-138 495.7 341 75.7
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.9e-138 495.4 341 74.2
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 6.6e-138 494.6 338 71.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.6e-138 494.6 342 70.5
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 6.6e-138 494.6 334 71.0
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 8.6e-138 494.2 341 73.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 4.3e-137 491.9 341 69.8
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.3e-137 491.9 334 77.8
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 5.6e-137 491.5 345 75.1
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 9.5e-137 490.7 335 70.7
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 3.6e-136 488.8 340 70.6
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 3.6e-136 488.8 336 80.1
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.2e-136 488.0 341 72.7
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 6.2e-136 488.0 339 73.7
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 6.2e-136 488.0 341 76.0
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 8.0e-136 487.6 342 71.1
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-135 486.9 358 67.3
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.3e-135 486.1 341 73.9
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 4.0e-135 485.3 344 72.7
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.2e-134 483.8 337 71.2
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.0e-134 483.0 338 70.7
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.6e-134 482.6 335 77.6
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-134 482.3 335 77.3
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 4.4e-134 481.9 335 68.4
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 7.5e-134 481.1 341 69.2
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 7.5e-134 481.1 338 74.0
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 9.8e-134 480.7 341 72.7
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.3e-133 480.3 343 74.6
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 8.3e-133 477.6 339 73.7
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 8.3e-133 477.6 340 71.5
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.1e-132 477.2 339 77.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.1e-132 477.2 334 70.4
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-132 476.9 344 73.8
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.2e-132 475.7 344 74.1
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 3.2e-132 475.7 343 75.2
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.1e-132 475.3 343 70.0
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 4.1e-132 475.3 341 72.7
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 9.2e-132 474.2 337 67.1
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.2e-131 473.8 343 76.4
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.2e-131 473.8 345 72.2
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.2e-131 473.8 344 73.5
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 4.6e-131 471.9 342 69.0
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.6e-131 471.9 342 73.4
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 6.0e-131 471.5 342 74.6
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 7.8e-131 471.1 343 68.5
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.3e-130 470.3 340 77.1
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.7e-130 469.9 364 63.7
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.3e-130 469.5 344 70.1
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 8.6e-130 467.6 342 67.8
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 8.6e-130 467.6 342 65.8
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.1e-129 467.2 344 70.6
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.9e-129 466.5 341 69.2
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.6e-128 463.4 335 66.0
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 2.1e-128 463.0 339 72.3
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.6e-128 462.2 338 68.3
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.6e-128 462.2 336 70.8
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 4.7e-128 461.8 339 74.0
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 4.7e-128 461.8 342 65.2
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 4.7e-128 461.8 340 70.6
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 6.2e-128 461.5 340 69.1
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.1e-127 460.7 341 68.3
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.1e-127 460.7 340 65.9
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.4e-127 460.3 340 69.1
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 2.3e-127 459.5 338 74.0
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 3.1e-127 459.1 343 73.8
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 6.8e-127 458.0 343 69.1
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.2e-126 457.2 340 73.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.5e-126 456.8 337 73.9
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.5e-126 456.8 347 65.7
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 5.8e-126 454.9 337 73.6
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 9.9e-126 454.1 338 68.9
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 4.9e-125 451.8 338 68.6
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.1e-124 450.7 337 65.3
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 6.0e-123 444.9 340 64.1
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.0e-122 444.1 338 64.5
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.3e-122 443.0 333 67.9
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.6e-120 435.6 300 71.0
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.7e-120 435.3 341 68.6
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 8.1e-120 434.5 344 69.8
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 8.1e-120 434.5 322 64.9
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 5.2e-119 431.8 337 63.2
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 6.8e-119 431.4 337 62.9
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 8.9e-119 431.0 441 53.5
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.4e-118 429.1 333 61.9
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.7e-117 426.8 338 68.3
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.7e-117 426.8 347 65.1
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.9e-117 426.0 301 77.7
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 3.8e-117 425.6 343 67.9
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 4.2e-116 422.2 339 58.7
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 5.4e-116 421.8 341 65.7
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 9.2e-116 421.0 344 66.0
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.6e-115 418.7 345 67.5
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 6.0e-115 418.3 341 57.2
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.3e-114 417.2 341 65.1
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.3e-114 417.2 344 65.1
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.7e-114 416.8 342 65.5
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.1e-114 415.2 340 58.2
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.9e-113 413.3 344 64.8
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 7.3e-113 411.4 236 82.6
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 4.8e-112 408.7 334 59.9
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 6.2e-112 408.3 346 63.9
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.8e-111 406.8 340 59.7
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 4.0e-111 405.6 344 62.8
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 1.5e-110 403.7 340 56.8
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.0e-110 403.3 339 61.7
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 2.6e-110 402.9 341 61.3
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 7.6e-110 401.4 341 60.7
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 9.9e-110 401.0 337 57.9
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.3e-109 400.6 334 57.2
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 8.4e-109 397.9 339 56.9
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 8.4e-109 397.9 339 63.4
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 3.2e-108 396.0 338 58.9
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 4.2e-108 395.6 339 63.4
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 7.1e-108 394.8 337 63.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.2e-107 394.0 337 58.5
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.9e-106 389.0 422 57.1
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 8.7e-106 387.9 287 70.4
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 9.9e-102 374.4 338 54.1
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.2e-101 373.2 293 68.9
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.0e-98 362.8 353 59.5
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.3e-97 359.4 297 62.0
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.1e-96 356.7 295 72.5
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 4.3e-89 332.4 294 57.5
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 9.0e-87 324.7 279 67.4
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 1.7e-85 320.5 335 51.9
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 2.5e-84 316.6 337 45.1
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 3.2e-84 316.2 291 54.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 5.1e-82 308.9 238 67.2
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.1e-82 308.9 334 50.0
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-81 307.8 221 71.9
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.5e-81 307.4 187 79.1
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.9e-81 307.0 239 70.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.8e-79 300.4 336 42.0
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.3e-77 294.3 240 61.2
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.1e-76 291.2 223 68.2
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 4.2e-76 289.3 282 52.1
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.6e-75 286.2 238 58.8
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.0e-74 284.6 280 52.1
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.0e-73 280.4 228 57.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 3.3e-73 279.6 337 39.8
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 6.9e-71 271.9 331 47.7
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.5e-70 269.2 232 55.2
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 6.1e-67 258.8 232 56.0
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.1e-66 255.8 240 50.4
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.3e-65 253.1 233 53.6
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 5.7e-65 252.3 233 60.1
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 7.2e-60 235.3 145 74.5
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.9e-58 229.6 242 48.8
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.2e-58 229.2 134 77.6
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-46 190.3 140 67.9
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.8e-42 177.6 102 80.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.3e-40 168.7 115 73.9
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-39 167.2 112 74.1
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 8.0e-35 152.1 124 62.1
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.2e-27 128.3 67 79.1
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.3e-24 118.2 67 70.1
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.7e-24 116.7 335 26.0
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 1.6e-22 111.3 145 36.6
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 5.6e-20 102.8 61 65.6
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.4e-17 93.2 57 75.4
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.9e-15 87.8 103 52.4
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 3.5e-14 83.6 217 26.7
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 4.7e-11 73.2 141 34.0
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.9e-07 61.2 45 66.7


User provided reference genes

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