Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0262631 Helianthus annuus HOM05D001833 ORTHO05D001776 5.1e-27 123.6 61 100.0
HanXRQChr03g0083591 Helianthus annuus HOM05D001833 ORTHO05D001776 2.5e-13 78.2 40 95.0
ECA233G3740 Erigeron canadensis HOM05D001833 ORTHO05D001776 1.8e-11 72.0 49 71.4
Lsat_1_v5_gn_6_80261 Lactuca sativa HOM05D001833 ORTHO05D001776 3.0e-11 71.2 40 82.5
HanXRQChr13g0414211 Helianthus annuus HOM05D001833 ORTHO05D001776 3.9e-11 70.9 40 82.5
Lsat_1_v5_gn_6_3960 Lactuca sativa HOM05D001833 ORTHO05D001776 6.7e-11 70.1 49 69.4
Hund14349 Selenicereus undatus HOM05D001833 ORTHO05D001776 3.3e-10 67.8 41 80.5
Actinidia14789 Actinidia chinensis HOM05D001833 ORTHO05D001776 4.4e-10 67.4 41 75.6
HanXRQChr13g0395431 Helianthus annuus HOM05D001833 ORTHO05D001776 4.4e-10 67.4 49 67.3
Actinidia09180 Actinidia chinensis HOM05D001833 ORTHO05D001776 5.7e-10 67.0 40 75.0
ECA240G0697 Erigeron canadensis HOM05D001833 ORTHO05D001776 5.7e-10 67.0 42 78.6
Hund11223 Selenicereus undatus HOM05D001833 ORTHO05D001776 7.4e-10 66.6 41 78.0
EL10Ac5g12077 Beta vulgaris HOM05D001833 ORTHO05D001776 9.7e-10 66.2 41 75.6
Glyma.09G206000 Glycine max HOM05D001833 ORTHO05D001776 1.3e-09 65.9 40 77.5
Nn1g00146 Nelumbo nucifera HOM05D001833 ORTHO05D001776 1.3e-09 65.9 39 82.1
Rhsim07G0129800 Rhododendron simsii HOM05D001833 ORTHO05D001776 1.3e-09 65.9 40 77.5
Potri.001G140200 Populus trichocarpa HOM05D001833 ORTHO05D001776 1.7e-09 65.5 41 75.6
Sabra01G0109100 Salix brachista HOM05D001833 ORTHO05D001776 2.2e-09 65.1 41 78.0
Glyma.01G016800 Glycine max HOM05D001833 ORTHO05D001776 2.8e-09 64.7 40 75.0
Phvul.002G139800 Phaseolus vulgaris HOM05D001833 ORTHO05D001776 2.8e-09 64.7 40 75.0
vmacro14184 Vaccinium macrocarpon HOM05D001833 ORTHO05D001776 2.8e-09 64.7 40 75.0
arahy.Tifrunner.gnm1.ann1.E82UHN Arachis hypogaea HOM05D001833 ORTHO05D001776 4.8e-09 63.9 40 75.0
arahy.Tifrunner.gnm1.ann1.J5SMTG Arachis hypogaea HOM05D001833 ORTHO05D001776 4.8e-09 63.9 40 75.0
Lalb_Chr16g0381231 Lupinus albus HOM05D001833 ORTHO05D001776 4.8e-09 63.9 40 77.5
Lsat_1_v5_gn_3_18900 Lactuca sativa HOM05D001833 ORTHO05D001776 6.3e-09 63.5 40 75.0
Ah.12g055210 Amaranthus hybridus HOM05D001833 ORTHO05D001776 8.2e-09 63.2 41 73.2
CSS0006687 Camellia sinensis var. sinensis HOM05D001833 ORTHO05D001776 8.2e-09 63.2 40 75.0
CSS0018962 Camellia sinensis var. sinensis HOM05D001833 ORTHO05D001776 8.2e-09 63.2 40 75.0
Ca_25195_v3 Cicer arietinum L. HOM05D001833 ORTHO05D001776 8.2e-09 63.2 40 75.0
Manes.17G014400 Manihot esculenta HOM05D001833 ORTHO05D001776 8.2e-09 63.2 40 77.5
CANSAT21G1640 Cannabis sativa HOM05D001833 ORTHO05D001776 1.1e-08 62.8 40 75.0
AUR62018695 Chenopodium quinoa HOM05D001833 ORTHO05D001776 1.1e-08 62.8 41 70.7
TWI15G1192 Tripterygium wilfordii HOM05D001833 ORTHO05D001776 1.1e-08 62.8 40 77.5
Medtr5g029890 Medicago truncatula HOM05D001833 ORTHO05D001776 1.4e-08 62.4 40 75.0
Sc22g0001590 Simmondsia chinensis HOM05D001833 ORTHO05D001776 1.4e-08 62.4 40 75.0
THA.LOC104798331 Tarenaya hassleriana HOM05D001833 ORTHO05D001776 1.4e-08 62.4 41 73.2
Aqoxy3G02276 Aquilegia oxysepala HOM05D001833 ORTHO05D001776 1.8e-08 62.0 40 72.5
Eucgr.E00265 Eucalyptus grandis HOM05D001833 ORTHO05D001776 1.8e-08 62.0 41 73.2
TAR375G0171 Trochodendron aralioides HOM05D001833 ORTHO05D001776 1.8e-08 62.0 40 77.5
VMungo1215G3454 Vigna mungo HOM05D001833 ORTHO05D001776 1.8e-08 62.0 40 72.5
AUR62007308 Chenopodium quinoa HOM05D001833 ORTHO05D001776 2.4e-08 61.6 41 70.7
Haze_08189 Corylus avellana HOM05D001833 ORTHO05D001776 2.4e-08 61.6 43 72.1
Manes.15G192980 Manihot esculenta HOM05D001833 ORTHO05D001776 2.4e-08 61.6 40 75.0
Potri.003G094000 Populus trichocarpa HOM05D001833 ORTHO05D001776 2.4e-08 61.6 41 75.6
TPR.G8083 Trifolium pratense HOM05D001833 ORTHO05D001776 2.4e-08 61.6 40 72.5
AL7G36730 Arabidopsis lyrata HOM05D001833 ORTHO05D001776 3.1e-08 61.2 41 73.2
AT4G17790 Arabidopsis thaliana HOM05D001833 ORTHO05D001776 3.1e-08 61.2 41 73.2
CSS0025300 Camellia sinensis var. sinensis HOM05D001833 ORTHO05D001776 3.1e-08 61.2 41 70.7
Dinv25237 Davidia involucrata HOM05D001833 ORTHO05D001776 3.1e-08 61.2 40 75.0
Migut.E00785 Erythranthe guttata HOM05D001833 ORTHO05D001776 3.1e-08 61.2 40 72.5
PGR031G3301 Punica granatum HOM05D001833 ORTHO05D001776 3.1e-08 61.2 40 75.0
Thecc.03G305900 Theobroma cacao HOM05D001833 ORTHO05D001776 3.1e-08 61.2 40 72.5
Actinidia03358 Actinidia chinensis HOM05D001833 ORTHO05D001776 4.1e-08 60.8 42 71.4
MSTRG.13749 Avicennia marina HOM05D001833 ORTHO05D001776 4.1e-08 60.8 40 72.5
FAN04G2866 Fragaria x ananassa HOM05D001833 ORTHO05D001776 4.1e-08 60.8 48 70.8
FAN08G2395 Fragaria x ananassa HOM05D001833 ORTHO05D001776 4.1e-08 60.8 48 70.8
Nn3g19445 Nelumbo nucifera HOM05D001833 ORTHO05D001776 4.1e-08 60.8 41 73.2
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 4.1e-08 60.8 40 70.0
Duzib205G1885 Durio zibethinus HOM05D001833 ORTHO05D001776 5.3e-08 60.5 40 72.5
Hma1.2p1_0303F.1_g118890 Hydrangea macrophylla HOM05D001833 ORTHO05D001776 5.3e-08 60.5 40 72.5
Lj8A305G43 Lonicera japonica HOM05D001833 ORTHO05D001776 5.3e-08 60.5 40 72.5
Psat2g137280 Pisum sativum HOM05D001833 ORTHO05D001776 5.3e-08 60.5 40 72.5
Sabra03G0063100 Salix brachista HOM05D001833 ORTHO05D001776 5.3e-08 60.5 43 72.1
TWI60G0528 Tripterygium wilfordii HOM05D001833 ORTHO05D001776 5.3e-08 60.5 40 75.0
C01p11510 Brassica napus HOM05D001833 ORTHO05D001776 6.9e-08 60.1 41 70.7
Duzib084G0086 Durio zibethinus HOM05D001833 ORTHO05D001776 6.9e-08 60.1 40 72.5
Thhalv10026024m.g Eutrema salsugineum HOM05D001833 ORTHO05D001776 6.9e-08 60.1 41 70.7
FvH4_5g22470 Fragaria vesca HOM05D001833 ORTHO05D001776 6.9e-08 60.1 40 72.5
FAN18G3392 Fragaria x ananassa HOM05D001833 ORTHO05D001776 6.9e-08 60.1 48 68.8
FAN18G4409 Fragaria x ananassa HOM05D001833 ORTHO05D001776 6.9e-08 60.1 48 68.8
Nitab4.5_0000353g0120 Nicotiana tabacum HOM05D001833 ORTHO05D001776 6.9e-08 60.1 40 72.5
PSO017G5622 Papaver somniferum HOM05D001833 ORTHO05D001776 6.9e-08 60.1 40 72.5
RcHm_v2.0_Chr7g0210261 Rosa chinensis HOM05D001833 ORTHO05D001776 6.9e-08 60.1 48 70.8
Sp7g16310 Schrenkiella parvula HOM05D001833 ORTHO05D001776 6.9e-08 60.1 41 70.7
Duzib068G0322 Durio zibethinus HOM05D001833 ORTHO05D001776 9.1e-08 59.7 40 72.5
Gorai.003G183600 Gossypium raimondii HOM05D001833 ORTHO05D001776 9.1e-08 59.7 40 70.0
BcaC09g51602 Brassica carinata HOM05D001833 ORTHO05D001776 1.2e-07 59.3 41 68.3
BcaNung00057 Brassica carinata HOM05D001833 ORTHO05D001776 1.2e-07 59.3 41 68.3
BraA03t14165Z Brassica rapa HOM05D001833 ORTHO05D001776 1.2e-07 59.3 41 68.3
CAN.G1522.4 Capsicum annuum HOM05D001833 ORTHO05D001776 1.2e-07 59.3 40 70.0
Cfa012473 Carpinus fangiana HOM05D001833 ORTHO05D001776 1.2e-07 59.3 40 75.0
MBI04_g20347_MAGBIO Magnolia biondii HOM05D001833 ORTHO05D001776 1.2e-07 59.3 41 70.7
PSO478G1791 Papaver somniferum HOM05D001833 ORTHO05D001776 1.2e-07 59.3 40 72.5
Carub.0007s2356 Capsella rubella HOM05D001833 ORTHO05D001776 1.5e-07 58.9 41 68.3
FAN13G1613 Fragaria x ananassa HOM05D001833 ORTHO05D001776 1.5e-07 58.9 48 68.8
Oeu028880.1 Olea europaea HOM05D001833 ORTHO05D001776 1.5e-07 58.9 40 65.0
BcaC06g33597 Brassica carinata HOM05D001833 ORTHO05D001776 2.0e-07 58.5 41 68.3
A03p50760 Brassica napus HOM05D001833 ORTHO05D001776 2.0e-07 58.5 41 68.3
C07p49140 Brassica napus HOM05D001833 ORTHO05D001776 2.0e-07 58.5 41 68.3
BolC7t45424H Brassica oleracea HOM05D001833 ORTHO05D001776 2.0e-07 58.5 41 68.3
Cpa.g.c28481.2 Carica papaya HOM05D001833 ORTHO05D001776 2.0e-07 58.5 40 75.0
CiPaw.12G065900 Carya illinoinensis HOM05D001833 ORTHO05D001776 2.0e-07 58.5 41 70.7
Gohir.D03G172900 Gossypium hirsutum HOM05D001833 ORTHO05D001776 2.0e-07 58.5 40 70.0
Gohir.D09G193900 Gossypium hirsutum HOM05D001833 ORTHO05D001776 2.0e-07 58.5 37 75.7
Gorai.006G217400 Gossypium raimondii HOM05D001833 ORTHO05D001776 2.0e-07 58.5 37 75.7
Atru.chr6.1647 Acer truncatum HOM05D001833 ORTHO05D001776 2.6e-07 58.2 40 72.5
Aa31LG6G530 Aethionema arabicum HOM05D001833 ORTHO05D001776 2.6e-07 58.2 41 68.3
Peaxi162Scf00170g01231 Petunia axillaris HOM05D001833 ORTHO05D001776 2.6e-07 58.2 40 67.5
MD06G1037100 Malus domestica HOM05D001833 ORTHO05D001776 3.4e-07 57.8 40 70.0
Actinidia25981 Actinidia chinensis HOM05D001833 ORTHO05D001776 4.5e-07 57.4 40 67.5
Eucgr.D02213 Eucalyptus grandis HOM05D001833 ORTHO05D001776 5.9e-07 57.0 40 70.0
Lalb_Chr05g0215891 Lupinus albus HOM05D001833 ORTHO05D001776 5.9e-07 57.0 40 67.5
MD16G1272300 Malus domestica HOM05D001833 ORTHO05D001776 5.9e-07 57.0 40 70.0
TAR629G1441 Trochodendron aralioides HOM05D001833 ORTHO05D001776 5.9e-07 57.0 40 70.0
A01p09850 Brassica napus HOM05D001833 ORTHO05D001776 7.7e-07 56.6 41 68.3
BraA01t00929Z Brassica rapa HOM05D001833 ORTHO05D001776 7.7e-07 56.6 41 68.3
Nitab4.5_0002203g0020 Nicotiana tabacum HOM05D001833 ORTHO05D001776 7.7e-07 56.6 40 70.0
QL12p004704 Quercus lobata HOM05D001833 ORTHO05D001776 7.7e-07 56.6 41 65.9
THA.LOC104806698 Tarenaya hassleriana HOM05D001833 ORTHO05D001776 1.0e-06 56.2 41 63.4
CiPaw.11G095900 Carya illinoinensis HOM05D001833 ORTHO05D001776 1.3e-06 55.8 41 65.9
Gohir.A08G155400 Gossypium hirsutum HOM05D001833 ORTHO05D001776 1.3e-06 55.8 40 67.5
Gohir.D08G176000 Gossypium hirsutum HOM05D001833 ORTHO05D001776 1.3e-06 55.8 40 67.5
Gorai.004G183800 Gossypium raimondii HOM05D001833 ORTHO05D001776 1.3e-06 55.8 40 67.5
Os04g0592600 Oryza sativa ssp. japonica HOM05D001833 ORTHO05D001776 1.3e-06 55.8 38 65.8
Zm00001eb072290 Zea mays HOM05D001833 ORTHO05D001776 1.3e-06 55.8 38 65.8
ATR0665G380 Amborella trichopoda HOM05D001833 ORTHO05D001776 1.7e-06 55.5 42 61.9
unitig_21.g20895 Utricularia gibba HOM05D001833 ORTHO05D001776 2.9e-06 54.7 40 67.5
Zm00001eb429920 Zea mays HOM05D001833 ORTHO05D001776 2.9e-06 54.7 38 63.2
ClCG09G011770 Citrullus lanatus HOM05D001833 ORTHO05D001776 3.8e-06 54.3 37 70.3
Lj2g0005058 Lotus japonicus HOM05D001833 ORTHO05D001776 3.8e-06 54.3 40 65.0
Solyc08g076670.3 Solanum lycopersicum HOM05D001833 ORTHO05D001776 3.8e-06 54.3 40 70.0
Sopen08g025220 Solanum pennellii HOM05D001833 ORTHO05D001776 3.8e-06 54.3 40 70.0
PGSC0003DMG400017528 Solanum tuberosum HOM05D001833 ORTHO05D001776 3.8e-06 54.3 40 70.0
Prupe.5G032200 Prunus persica HOM05D001833 ORTHO05D001776 5.0e-06 53.9 40 65.0
HPP92_014660 Vanilla planifolia HOM05D001833 ORTHO05D001776 5.0e-06 53.9 37 62.2


User provided reference genes

Program Settings