Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 0.0e+00 1255.0 670 100.0
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.4e-205 720.3 685 57.4
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 5.9e-185 651.7 677 53.6
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.9e-183 646.7 676 55.9
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 4.0e-149 532.7 694 47.7
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 9.3e-146 521.5 689 45.0
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.0e-144 518.1 688 46.8
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.4e-141 507.7 709 44.1
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 3.1e-141 506.5 701 43.7
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 6.9e-141 505.4 694 42.7
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.7e-139 500.7 703 45.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.7e-139 500.7 703 45.0
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 2.4e-138 496.9 584 48.5
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 7.9e-137 491.9 704 44.7
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.1e-134 483.8 700 45.1
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.6e-132 476.9 699 43.1
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 8.4e-131 471.9 730 42.9
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 5.5e-130 469.2 695 41.9
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 5.5e-130 469.2 710 42.4
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.1e-130 468.8 707 41.4
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.7e-129 466.8 694 42.4
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.0e-128 464.9 708 40.7
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.3e-128 464.5 682 43.4
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 2.5e-127 460.3 703 41.3
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 4.3e-127 459.5 685 41.9
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.3e-126 458.0 691 41.8
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 6.2e-126 455.7 697 42.3
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.1e-125 454.9 607 43.2
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.4e-125 454.5 711 40.1
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 3.1e-125 453.4 687 40.5
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 3.1e-125 453.4 701 40.7
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 5.3e-125 452.6 707 42.4
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 2.0e-124 450.7 697 40.7
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.8e-124 449.1 705 39.4
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.8e-123 446.4 700 39.4
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.9e-123 446.0 705 42.8
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.1e-122 444.9 705 42.8
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.3e-122 441.8 706 37.4
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 6.0e-121 439.1 775 39.1
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-120 438.0 712 39.9
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.1e-119 434.9 693 39.8
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.9e-119 434.1 707 42.9
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 3.3e-119 433.3 710 39.4
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.6e-118 431.0 601 41.8
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 2.8e-118 430.3 689 39.0
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 6.3e-118 429.1 690 41.6
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.9e-116 422.5 682 42.1
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 2.2e-115 420.6 695 38.3
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.9e-115 420.2 566 41.5
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 5.0e-115 419.5 705 39.1
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 6.5e-115 419.1 695 38.6
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 8.4e-115 418.7 678 40.7
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 8.4e-115 418.7 704 37.9
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.1e-114 418.3 656 38.4
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.4e-114 417.9 676 40.1
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.2e-114 415.6 587 42.4
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 7.2e-114 415.6 687 37.7
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 7.2e-114 415.6 696 38.4
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 6.1e-113 412.5 710 38.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 6.1e-113 412.5 534 45.5
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 7.9e-113 412.1 697 40.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.8e-112 411.0 703 38.1
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 8.7e-112 408.7 615 39.2
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.1e-111 408.3 578 43.3
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 3.3e-111 406.8 604 41.2
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.6e-110 404.4 579 41.5
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-110 404.4 697 38.2
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.4e-109 401.4 597 41.7
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.8e-109 401.0 697 38.0
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.8e-109 401.0 713 39.6
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.4e-109 400.6 709 38.4
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.4e-109 400.6 570 39.8
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 4.1e-109 399.8 709 38.4
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 9.0e-109 398.7 707 38.3
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.2e-107 394.0 613 40.5
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 2.9e-107 393.7 704 39.1
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.9e-106 391.0 731 37.3
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 7.2e-106 389.0 706 37.5
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 9.4e-106 388.7 575 39.5
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 9.4e-106 388.7 692 36.1
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 9.4e-106 388.7 586 40.1
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.7e-105 387.1 651 37.5
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 4.3e-103 379.8 709 36.8
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 6.3e-102 375.9 628 40.1
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.1e-101 375.2 708 37.4
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 3.1e-101 373.6 627 37.8
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 9.1e-101 372.1 709 37.4
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.5e-100 369.8 578 39.6
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 8.5e-99 365.5 699 38.1
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.1e-98 365.2 693 37.7
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.7e-97 360.5 569 40.9
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.0e-96 358.6 628 36.9
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.1e-95 355.1 605 39.0
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.0e-89 332.4 480 40.6
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.0e-88 332.0 589 37.0
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.2e-84 318.5 452 42.0
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.5e-82 309.7 492 43.7
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.5e-82 309.7 669 33.9
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-79 302.0 454 38.3
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.8e-78 297.4 605 33.9
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 2.4e-77 294.3 627 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.6e-76 291.6 660 32.0
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 6.5e-75 286.2 661 33.1
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.5e-74 283.1 416 40.1
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.6e-73 280.4 364 42.9
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 3.1e-69 267.3 471 38.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 7.0e-69 266.2 472 35.6
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 2.0e-68 264.6 545 35.6
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 2.0e-68 264.6 497 35.0
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 3.8e-67 260.4 660 32.4
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.5e-66 255.8 407 39.1
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 9.5e-66 255.8 618 31.6
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.7e-65 253.4 492 34.8
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.5e-63 248.4 354 41.2
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 8.3e-62 242.7 662 30.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.7e-60 237.7 667 30.3
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.7e-60 237.7 667 30.3
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.0e-59 233.4 375 37.6
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.7e-54 218.4 582 30.9
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.2e-53 212.6 329 36.2
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.0e-51 206.8 427 33.3
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.8e-49 201.1 477 31.7
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 5.2e-40 170.2 365 30.7
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 3.9e-35 154.1 218 40.4
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.2e-33 149.1 221 36.7
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.8e-33 147.9 233 40.3
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 6.2e-33 146.7 123 56.1
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.4e-32 144.8 216 41.7
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.4e-31 140.6 143 53.8
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 4.4e-31 140.6 219 39.7
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 2.2e-30 138.3 359 31.8
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.4e-29 133.7 128 50.8
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.1e-28 131.7 371 28.8
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.5e-26 124.8 409 26.2
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 5.6e-26 123.6 218 36.2
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.3e-25 122.5 180 33.9
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.1e-25 121.7 333 28.8
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.4e-24 119.0 234 37.6
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.0e-23 115.2 123 47.2
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 2.2e-22 111.7 372 27.7
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 6.4e-22 110.2 132 47.0
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 6.4e-22 110.2 307 30.3
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.1e-21 109.4 189 35.4
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 4.6e-20 104.0 244 33.6
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.8e-17 94.7 98 51.0
HanXRQChr07g0188711 Helianthus annuus HOM05D004086 ORTHO05D004641 6.2e-17 93.6 60 83.3
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.1e-16 91.3 71 63.4
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 3.4e-15 87.8 86 46.5
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.5e-15 87.4 83 48.2
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.8e-15 87.0 84 51.2
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.3e-14 85.9 621 23.7
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 5.5e-13 80.5 86 43.0
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 7.1e-13 80.1 226 30.1
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.6e-12 79.0 90 44.4
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.7e-12 78.2 621 23.2
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.0e-11 76.3 121 38.0
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.3e-11 75.9 251 27.9
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.8e-11 75.5 91 42.9
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.5e-10 71.6 48 70.8
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 1.3e-09 69.3 188 30.9
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 2.8e-09 68.2 117 38.5
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 3.7e-09 67.8 384 25.8
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.2e-09 67.0 142 34.5
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.2e-09 67.0 115 38.3
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 1.0e-06 59.7 120 34.2
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.3e-06 59.3 79 36.7


User provided reference genes

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