Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 1.3e-108 396.4 193 100.0
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 2.3e-97 359.0 193 87.6
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 1.6e-95 352.8 193 87.6
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.1e-94 350.1 182 91.8
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 1.8e-94 349.4 193 85.5
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 6.9e-94 347.4 190 87.4
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.2e-93 346.7 193 85.0
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 83.9
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 83.9
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 83.9
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 4.5e-93 344.7 193 85.0
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 191 83.8
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 5.8e-93 344.4 193 85.0
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 193 85.5
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 7.6e-93 344.0 190 86.8
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 7.6e-93 344.0 193 84.5
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 1.0e-92 343.6 193 83.9
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.0e-92 343.6 193 83.9
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 1.0e-92 343.6 193 85.0
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 86.0
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 85.0
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.7e-92 342.8 193 85.0
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 1.7e-92 342.8 193 85.0
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 2.2e-92 342.4 193 83.4
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 2.2e-92 342.4 193 85.5
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 2.9e-92 342.0 190 86.3
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 2.9e-92 342.0 193 85.0
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 2.9e-92 342.0 193 84.5
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 3.8e-92 341.7 193 85.0
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 3.8e-92 341.7 190 86.3
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 3.8e-92 341.7 194 85.6
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 4.9e-92 341.3 190 86.8
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 4.9e-92 341.3 193 85.0
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 6.4e-92 340.9 193 82.4
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 6.4e-92 340.9 193 85.0
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 6.4e-92 340.9 193 82.9
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 8.4e-92 340.5 192 83.9
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 8.4e-92 340.5 193 85.0
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.1e-91 340.1 193 81.9
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.1e-91 340.1 193 81.9
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 1.1e-91 340.1 190 85.8
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 1.1e-91 340.1 190 85.8
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 1.4e-91 339.7 193 83.4
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.4e-91 339.7 193 82.4
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 1.4e-91 339.7 190 85.3
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.9e-91 339.3 193 85.0
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 1.9e-91 339.3 193 85.0
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 84.5
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 84.5
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 3.2e-91 338.6 193 84.5
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 3.2e-91 338.6 193 83.4
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 3.2e-91 338.6 193 82.4
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 4.2e-91 338.2 193 83.9
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 4.2e-91 338.2 190 85.8
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 5.5e-91 337.8 190 85.8
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 9.3e-91 337.0 193 81.9
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 85.8
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 3.5e-90 335.1 190 83.2
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 3.5e-90 335.1 190 83.2
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 4.6e-90 334.7 193 81.3
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 6.0e-90 334.3 193 83.9
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 7.9e-90 334.0 190 84.7
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.3e-89 333.2 193 83.4
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 3.0e-89 332.0 193 81.9
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 3.9e-89 331.6 193 83.4
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 3.9e-89 331.6 197 82.7
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 8.7e-89 330.5 193 81.9
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 8.7e-89 330.5 193 81.9
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 1.5e-88 329.7 194 83.0
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 1.9e-88 329.3 193 83.4
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 3.3e-88 328.6 193 82.4
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 4.3e-88 328.2 193 80.8
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 4.3e-88 328.2 219 74.0
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 7.4e-88 327.4 190 81.6
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 2.1e-87 325.9 193 81.3
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 4.0e-86 321.6 193 81.3
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 4.0e-86 321.6 190 82.1
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 2.0e-85 319.3 198 78.8
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 7.6e-85 317.4 193 80.3
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 1.0e-84 317.0 193 80.8
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 1.0e-84 317.0 232 69.8
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 6.5e-84 314.3 247 66.8
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 8.4e-84 313.9 177 81.9
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 1.4e-83 313.2 200 74.5
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.6e-82 309.7 193 77.7
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 2.1e-82 309.3 190 79.5
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.1e-82 307.8 210 72.4
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 1.1e-80 303.5 164 87.8
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.9e-80 302.8 177 79.1
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 3.3e-80 302.0 170 85.9
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 1.4e-78 296.6 164 82.3
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 1.4e-78 296.6 190 77.9
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.2e-77 293.5 173 81.5
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 2.6e-77 292.4 193 71.5
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 5.9e-77 291.2 175 81.7
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 7.9e-74 280.8 167 81.4
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 1.8e-73 279.6 159 83.6
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 2.5e-72 275.8 189 70.4
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 2.5e-67 259.2 157 82.2
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.2e-67 258.5 158 81.6
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.1e-66 256.1 156 80.8
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.1e-64 250.4 134 89.6
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 2.0e-64 249.6 193 66.3
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 1.2e-61 240.4 139 82.7
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.5e-61 240.0 164 69.5
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 1.0e-60 237.3 177 65.0
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.5e-59 233.4 227 57.3
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 4.7e-58 228.4 166 63.3
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 9.7e-56 220.7 166 61.4
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.7e-55 219.9 190 63.2
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 2.8e-55 219.2 173 59.0
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 2.4e-54 216.1 133 80.5
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.9e-51 206.5 178 54.5
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.2e-50 203.8 112 82.1
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.8e-49 197.6 166 63.3
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 1.1e-46 190.7 177 54.2
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 4.7e-42 175.3 110 73.6
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 1.8e-41 173.3 142 54.2
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 8.3e-39 164.5 144 52.1
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 1.5e-35 153.7 112 61.6
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 2.9e-28 129.4 135 52.6
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.9e-27 126.7 167 45.5
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 2.6e-24 116.3 126 49.2
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.6e-24 116.3 135 51.1
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.3e-23 114.0 135 50.4
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.8e-21 104.8 71 67.6
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.2e-18 97.4 218 36.7
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.8e-17 91.7 123 44.7
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.5e-16 90.5 135 43.0
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 2.6e-16 89.7 53 79.2
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 1.9e-14 83.6 57 70.2
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.4e-14 83.2 57 70.2
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 1.7e-12 77.0 50 76.0
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 9.9e-08 61.2 33 75.8


User provided reference genes

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