Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 0.0e+00 1137.9 565 100.0
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 6.4e-241 837.4 545 80.0
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 3.8e-225 785.0 592 73.5
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 4.3e-221 771.5 618 70.2
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 9.6e-221 770.4 559 74.2
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 1.1e-216 756.9 614 69.5
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 6.9e-211 737.6 594 68.9
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.0e-209 731.5 605 67.8
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.1e-207 726.1 586 68.4
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 4.6e-207 724.9 548 72.6
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 3.0e-206 722.2 504 74.4
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 2.0e-205 719.5 574 68.1
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 4.4e-205 718.4 500 75.4
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 9.7e-205 717.2 531 73.8
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.2e-204 716.1 587 67.8
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 2.8e-204 715.7 522 73.4
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.8e-204 714.9 542 71.6
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.1e-203 713.8 609 64.9
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.4e-203 713.4 552 68.8
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 2.0e-202 709.5 556 70.5
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 5.9e-202 708.0 596 66.4
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.0e-201 707.2 600 67.0
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.3e-201 706.8 526 71.3
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.9e-201 705.7 595 66.1
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 5.0e-201 704.9 572 66.4
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 6.5e-201 704.5 591 65.0
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 8.5e-201 704.1 567 66.5
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 1.1e-200 703.7 579 65.3
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.1e-200 703.7 584 65.2
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.9e-200 703.0 475 75.4
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 2.5e-200 702.6 558 69.4
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 5.5e-200 701.4 556 69.8
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 5.5e-200 701.4 416 83.9
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 9.4e-200 700.7 599 65.9
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.1e-199 699.5 592 66.4
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 7.9e-199 697.6 511 70.5
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 7.9e-199 697.6 621 62.2
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.0e-198 697.2 601 64.9
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.4e-198 696.8 566 68.2
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.4e-198 696.8 596 64.3
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 3.0e-198 695.7 596 65.8
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 8.8e-198 694.1 418 83.7
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 8.8e-198 694.1 606 64.0
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 1.1e-197 693.7 568 66.9
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.0e-197 693.0 503 72.2
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 2.0e-197 693.0 590 65.9
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 2.6e-197 692.6 590 65.6
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.3e-196 690.3 597 65.7
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.7e-196 689.9 528 69.7
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 6.3e-196 688.0 574 65.5
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 8.2e-196 687.6 598 64.4
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.1e-195 687.2 591 65.1
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.4e-195 686.8 597 64.5
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 4.1e-195 685.3 508 70.7
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.1e-195 685.3 594 63.5
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.1e-195 685.3 599 64.1
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 5.3e-195 684.9 564 65.8
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 5.3e-195 684.9 564 65.6
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.2e-194 683.7 615 63.1
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.6e-194 683.3 598 64.7
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.0e-194 682.9 589 64.2
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 2.0e-194 682.9 594 64.1
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.6e-194 682.6 599 63.9
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 3.5e-194 682.2 551 66.8
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 4.5e-194 681.8 563 65.4
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 4.5e-194 681.8 577 65.2
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 5.9e-194 681.4 591 64.5
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.0e-193 680.6 534 70.8
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.3e-193 680.2 603 61.9
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.2e-193 679.5 497 71.0
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 6.5e-193 677.9 533 67.5
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 6.5e-193 677.9 570 65.6
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 8.5e-193 677.6 533 67.5
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.1e-192 677.2 602 63.0
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.1e-192 677.2 591 64.3
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 2.5e-192 676.0 583 64.7
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 3.2e-192 675.6 533 66.6
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 3.2e-192 675.6 453 75.9
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 4.2e-192 675.2 596 62.9
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 5.5e-192 674.9 586 64.5
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 7.2e-192 674.5 519 68.0
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 2.1e-191 672.9 504 70.2
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.1e-191 672.9 597 61.5
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 2.7e-191 672.5 564 65.2
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 3.6e-191 672.2 585 63.4
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 3.6e-191 672.2 604 63.1
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.5e-189 666.8 585 62.9
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.0e-189 666.4 589 64.7
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 4.4e-189 665.2 418 79.7
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 7.5e-189 664.5 585 62.2
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 2.2e-188 662.9 575 64.5
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.8e-188 662.5 506 70.0
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 2.8e-188 662.5 436 76.8
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 2.8e-188 662.5 599 61.1
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 6.3e-188 661.4 556 66.4
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 6.3e-188 661.4 556 66.4
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.4e-187 660.2 495 71.3
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.4e-187 660.2 495 71.3
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.4e-187 660.2 495 71.3
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.4e-187 660.2 578 64.7
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.8e-187 659.8 579 64.6
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 2.4e-187 659.4 600 61.8
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 2.4e-187 659.4 597 62.5
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.5e-186 655.6 459 72.8
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.5e-186 655.6 576 63.2
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 4.5e-186 655.2 412 79.1
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.0e-185 654.1 453 73.3
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.2e-185 652.9 570 63.9
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.2e-185 652.9 480 70.4
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.2e-185 652.9 591 61.1
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 2.9e-185 652.5 434 75.6
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 5.0e-185 651.7 581 62.5
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 8.5e-185 651.0 413 76.8
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 8.5e-185 651.0 595 61.7
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.5e-184 650.2 480 69.4
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 9.4e-184 647.5 599 59.4
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.2e-183 647.1 412 78.4
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 2.7e-183 646.0 466 72.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 8.0e-183 644.4 511 67.3
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.4e-182 643.7 457 72.4
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 5.2e-182 641.7 466 68.7
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.2e-181 640.6 523 64.8
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 5.7e-181 638.3 563 61.8
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 1.7e-180 636.7 558 62.0
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.8e-180 636.0 407 77.4
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 8.3e-180 634.4 411 77.4
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 4.5e-178 628.6 427 73.8
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 7.7e-178 627.9 551 61.3
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.1e-176 624.0 367 83.7
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 3.6e-175 619.0 416 75.7
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 5.2e-174 615.1 533 63.6
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.7e-172 610.1 582 60.3
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-165 587.4 364 81.9
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 4.4e-165 585.5 426 71.8
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.3e-161 573.2 365 76.4
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.0e-158 564.3 580 58.1
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 2.1e-146 523.5 437 62.0
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.6e-144 515.4 427 61.8
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.6e-143 512.7 432 61.8
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 3.6e-143 512.7 357 70.6
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 2.4e-131 473.4 377 63.7
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 4.2e-131 472.6 376 66.5
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.7e-129 467.2 314 71.3
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.7e-100 370.9 209 83.7
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 3.3e-96 356.7 386 50.3
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-94 351.7 197 84.3
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.5e-92 342.0 377 54.6
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 2.2e-84 317.4 180 83.3
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 5.5e-75 286.2 159 83.6
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.4e-75 285.4 156 85.3
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.4e-75 285.4 156 85.3
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 2.1e-74 284.3 240 61.2
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.6e-64 250.8 457 38.1
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.1e-62 245.4 359 39.0
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 7.0e-54 216.1 183 63.9
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 5.9e-53 213.0 302 38.7
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 3.4e-48 197.2 127 79.5
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.9e-47 194.1 280 37.9
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 7.3e-43 179.5 109 79.8
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 5.2e-41 173.3 188 51.1
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.6e-35 153.3 110 65.5
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 4.0e-33 147.1 151 53.0
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.2e-32 145.6 210 37.6
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 2.6e-32 144.4 129 60.5
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.2e-31 141.4 87 75.9
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 8.3e-31 139.4 83 77.1
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.0e-28 132.5 83 72.3
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 4.0e-25 120.6 98 66.3
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 2.7e-21 107.8 114 50.9
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 5.1e-20 103.6 99 56.6
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 2.8e-18 97.8 226 37.2
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 5.3e-17 93.6 168 38.7
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.2e-13 82.4 175 34.3
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 4.6e-13 80.5 49 81.6
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 4.3e-11 73.9 111 41.4
TAR624G1033 Trochodendron aralioides HOM05D003880 ORTHO05D415972 1.9e-06 58.5 123 37.4
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 2.4e-06 58.2 32 78.1
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 3.2e-06 57.8 39 71.8


User provided reference genes

Program Settings