Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0260221 Helianthus annuus HOM05D024719 ORTHO05D004292 4.6e-113 411.4 228 100.0
HanXRQChr17g0565821 Helianthus annuus HOM05D024719 ORTHO05D219727 3.6e-33 146.0 92 93.5
HanXRQChr09g0260211 Helianthus annuus HOM05D003605 ORTHO05D004292 2.0e-31 140.2 85 85.9
HanXRQChr15g0484161 Helianthus annuus HOM05D003605 ORTHO05D004292 4.4e-31 139.0 85 84.7
ECA232G1065 Erigeron canadensis HOM05D003605 ORTHO05D004292 8.3e-30 134.8 85 82.4
Lsat_1_v5_gn_4_141440 Lactuca sativa HOM05D003605 ORTHO05D004292 8.3e-30 134.8 85 81.2
ECA232G4497 Erigeron canadensis HOM05D003605 ORTHO05D004292 3.2e-29 132.9 85 77.6
DCAR_032171 Daucus carota HOM05D003605 ORTHO05D004292 7.0e-29 131.7 85 78.8
Cc07_g15560 Coffea canephora HOM05D003605 ORTHO05D004292 9.2e-29 131.3 85 80.0
GSVIVG01022163001 Vitis vinifera HOM05D003605 ORTHO05D004292 2.0e-28 130.2 85 78.8
Cpa.g.sc20.227 Carica papaya HOM05D003605 ORTHO05D004292 2.7e-28 129.8 85 78.8
Hma1.2p1_0011F.1_g007160 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 2.7e-28 129.8 85 78.8
SGA_v2.0_scaffold34G13608 Striga asiatica HOM05D003605 ORTHO05D004292 2.7e-28 129.8 85 78.8
Migut.H02387 Erythranthe guttata HOM05D003605 ORTHO05D004292 3.5e-28 129.4 85 78.8
CiPaw.04G096600 Carya illinoinensis HOM05D003605 ORTHO05D004292 4.6e-28 129.0 85 78.8
Solyc04g054710.3 Solanum lycopersicum HOM05D003605 ORTHO05D004292 4.6e-28 129.0 85 78.8
Sopen04g024460 Solanum pennellii HOM05D003605 ORTHO05D004292 4.6e-28 129.0 85 78.8
MSTRG.23329 Avicennia marina HOM05D003605 ORTHO05D004292 5.9e-28 128.6 85 77.6
Dinv16312 Davidia involucrata HOM05D003605 ORTHO05D004292 5.9e-28 128.6 85 76.5
Medtr8g091280 Medicago truncatula HOM05D003605 ORTHO05D004292 5.9e-28 128.6 85 74.1
PGSC0003DMG400027919 Solanum tuberosum HOM05D003605 ORTHO05D004292 7.8e-28 128.3 85 78.8
vmacro18616 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 7.8e-28 128.3 85 77.6
Atru.chr4.227 Acer truncatum HOM05D003605 ORTHO05D004292 1.0e-27 127.9 85 76.5
AUR62029939 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.0e-27 127.9 85 77.6
AUR62033748 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.0e-27 127.9 85 77.6
Sc04g0003290 Simmondsia chinensis HOM05D003605 ORTHO05D004292 1.0e-27 127.9 85 77.6
CAN.G878.8 Capsicum annuum HOM05D003605 ORTHO05D004292 1.3e-27 127.5 85 77.6
Nn5g29013 Nelumbo nucifera HOM05D003605 ORTHO05D004292 1.3e-27 127.5 85 76.5
Nitab4.5_0004386g0030 Nicotiana tabacum HOM05D003605 ORTHO05D004292 1.3e-27 127.5 85 77.6
Prupe.6G179700 Prunus persica HOM05D003605 ORTHO05D004292 1.3e-27 127.5 84 78.6
Rhsim08G0008700 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.3e-27 127.5 85 76.5
Thecc.01G106100 Theobroma cacao HOM05D003605 ORTHO05D004292 1.3e-27 127.5 85 76.5
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 1.7e-27 127.1 85 75.3
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.7e-27 127.1 85 75.3
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.7e-27 127.1 85 75.3
QL02p032424 Quercus lobata HOM05D003605 ORTHO05D004292 1.7e-27 127.1 85 77.6
Rhsim08G0008800 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.7e-27 127.1 85 76.5
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 1.7e-27 127.1 85 75.3
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 1.7e-27 127.1 85 76.5
TAR376G0746 Trochodendron aralioides HOM05D003605 ORTHO05D004292 1.7e-27 127.1 85 76.5
MD15G1329000 Malus domestica HOM05D003605 ORTHO05D004292 2.3e-27 126.7 85 76.5
Atru.chr1.3714 Acer truncatum HOM05D003605 ORTHO05D004292 2.9e-27 126.3 85 75.3
Hund02342 Selenicereus undatus HOM05D003605 ORTHO05D004292 2.9e-27 126.3 85 75.3
GSVIVG01008982001 Vitis vinifera HOM05D003605 ORTHO05D004292 2.9e-27 126.3 85 76.5
Nitab4.5_0000214g0060 Nicotiana tabacum HOM05D003605 ORTHO05D004292 3.9e-27 125.9 85 76.5
Duzib147G1273 Durio zibethinus HOM05D003605 ORTHO05D004292 5.0e-27 125.6 85 76.5
TWI77G0071 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 5.0e-27 125.6 83 78.3
arahy.Tifrunner.gnm1.ann1.8A1TPW Arachis hypogaea HOM05D003605 ORTHO05D004292 6.6e-27 125.2 83 78.3
arahy.Tifrunner.gnm1.ann1.RRG4JE Arachis hypogaea HOM05D003605 ORTHO05D004292 6.6e-27 125.2 83 78.3
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 6.6e-27 125.2 85 76.5
Gohir.A11G199633 Gossypium hirsutum HOM05D003605 ORTHO05D004292 6.6e-27 125.2 85 75.3
Gohir.D11G224500 Gossypium hirsutum HOM05D003605 ORTHO05D004292 6.6e-27 125.2 85 75.3
Gorai.007G241800 Gossypium raimondii HOM05D003605 ORTHO05D004292 6.6e-27 125.2 85 75.3
Peaxi162Scf00183g01421 Petunia axillaris HOM05D003605 ORTHO05D004292 6.6e-27 125.2 85 77.6
TAR628G1078 Trochodendron aralioides HOM05D003605 ORTHO05D004292 6.6e-27 125.2 85 74.1
Ah.04g164730 Amaranthus hybridus HOM05D003605 ORTHO05D004292 8.6e-27 124.8 85 74.1
EL10Ac5g11501 Beta vulgaris HOM05D003605 ORTHO05D004292 8.6e-27 124.8 85 75.3
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 8.6e-27 124.8 85 76.5
Duzib264G0977 Durio zibethinus HOM05D003605 ORTHO05D004292 8.6e-27 124.8 85 76.5
Gohir.D13G027000 Gossypium hirsutum HOM05D003605 ORTHO05D004292 8.6e-27 124.8 85 75.3
Gorai.013G030300 Gossypium raimondii HOM05D003605 ORTHO05D004292 8.6e-27 124.8 85 75.3
Lj4g0017562 Lotus japonicus HOM05D003605 ORTHO05D004292 8.6e-27 124.8 83 77.1
Lalb_Chr07g0185001 Lupinus albus HOM05D003605 ORTHO05D004292 8.6e-27 124.8 84 76.2
Lalb_Chr13g0296071 Lupinus albus HOM05D003605 ORTHO05D004292 8.6e-27 124.8 84 75.0
Sabra07G0072900 Salix brachista HOM05D003605 ORTHO05D004292 8.6e-27 124.8 85 74.1
Glyma.05G181000 Glycine max HOM05D003605 ORTHO05D004292 1.5e-26 124.0 84 76.2
Oeu053564.1 Olea europaea HOM05D003605 ORTHO05D004292 1.5e-26 124.0 85 77.6
TWI53G0811 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 1.5e-26 124.0 83 77.1
Manes.12G138300 Manihot esculenta HOM05D003605 ORTHO05D004292 1.9e-26 123.6 85 72.9
Potri.007G088426 Populus trichocarpa HOM05D003605 ORTHO05D004292 1.9e-26 123.6 85 74.1
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 2.5e-26 123.2 85 74.1
Glyma.08G138800 Glycine max HOM05D003605 ORTHO05D004292 2.5e-26 123.2 84 75.0
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 3.3e-26 122.9 85 75.3
MD01G1024400 Malus domestica HOM05D003605 ORTHO05D004292 3.3e-26 122.9 82 76.8
Potri.005G079200 Populus trichocarpa HOM05D003605 ORTHO05D004292 3.3e-26 122.9 85 74.1
QL06p050316 Quercus lobata HOM05D003605 ORTHO05D004292 4.3e-26 122.5 84 75.0
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 4.3e-26 122.5 83 75.9
CSS0003079 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 5.6e-26 122.1 85 72.9
Gohir.A13G028200 Gossypium hirsutum HOM05D003605 ORTHO05D004292 7.3e-26 121.7 85 74.1
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 7.3e-26 121.7 83 74.7
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 7.3e-26 121.7 85 72.9
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 9.5e-26 121.3 85 72.9
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 9.5e-26 121.3 85 74.1
CDE03G0458 Ceratophyllum demersum HOM05D003605 ORTHO05D004292 1.2e-25 120.9 85 71.8
PGR004G1268 Punica granatum HOM05D003605 ORTHO05D004292 1.6e-25 120.6 85 71.8
VMungo0251G1785 Vigna mungo HOM05D003605 ORTHO05D004292 1.6e-25 120.6 83 74.7
Ciclev10025279m.g Citrus clementina HOM05D003605 ORTHO05D004292 2.1e-25 120.2 85 71.8
Eucgr.I00398 Eucalyptus grandis HOM05D003605 ORTHO05D004292 2.1e-25 120.2 85 70.6
Lj6g0022585 Lotus japonicus HOM05D003605 ORTHO05D004292 2.1e-25 120.2 84 72.6
Medtr7g106830 Medicago truncatula HOM05D003605 ORTHO05D004292 2.8e-25 119.8 85 72.9
RhsimUnG0163700 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.8e-25 119.8 85 72.9
SHI11587 Sapria himalayana HOM05D003605 ORTHO05D004292 2.8e-25 119.8 114 57.9
Eucgr.I00463 Eucalyptus grandis HOM05D003605 ORTHO05D004292 4.7e-25 119.0 85 70.6
Psat7g053000 Pisum sativum HOM05D003605 ORTHO05D004292 4.7e-25 119.0 83 73.5
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 4.7e-25 119.0 83 73.5
HPP92_016106 Vanilla planifolia HOM05D003605 ORTHO05D004292 4.7e-25 119.0 83 72.3
Rhsim04G0097000 Rhododendron simsii HOM05D003605 ORTHO05D004292 6.1e-25 118.6 85 71.8
RhsimUnG0212800 Rhododendron simsii HOM05D003605 ORTHO05D004292 6.1e-25 118.6 85 71.8
ATR0564G471 Amborella trichopoda HOM05D003605 ORTHO05D004292 8.0e-25 118.2 85 69.4
arahy.Tifrunner.gnm1.ann1.28TKL1 Arachis hypogaea HOM05D003605 ORTHO05D004292 8.0e-25 118.2 203 39.4
Oeu032173.1 Olea europaea HOM05D003605 ORTHO05D004292 1.0e-24 117.9 83 73.5
Zm00001eb348660 Zea mays HOM05D003605 ORTHO05D004292 1.0e-24 117.9 83 73.5
FAN23G2759 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.4e-24 117.5 110 58.2
Lsat_1_v5_gn_4_141381 Lactuca sativa HOM05D003605 ORTHO05D004292 1.4e-24 117.5 85 70.6
Phvul.001G250600 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 3.1e-24 116.3 85 70.6
Glyma.11G238300 Glycine max HOM05D003605 ORTHO05D004292 4.0e-24 115.9 84 70.2
Migut.L00103 Erythranthe guttata HOM05D003605 ORTHO05D004292 6.8e-24 115.2 86 73.3
CANSAT01G2754 Cannabis sativa HOM05D003605 ORTHO05D004292 8.9e-24 114.8 84 69.0
SEGI_19936 Sequoiadendron giganteum HOM05D003605 ORTHO05D004292 1.5e-23 114.0 84 65.5
arahy.Tifrunner.gnm1.ann1.K33YLS Arachis hypogaea HOM05D003605 ORTHO05D004292 2.6e-23 113.2 85 69.4
AagrBONN_evm.TU.Sc2ySwM_344.2348 Anthoceros agrestis HOM05D003605 ORTHO05D004292 9.8e-23 111.3 84 65.5
Pp3c1_16910 Physcomitrium patens HOM05D003605 ORTHO05D004292 1.7e-22 110.5 83 68.7
CANSAT01G1177 Cannabis sativa HOM05D003605 ORTHO05D004292 2.2e-22 110.2 84 66.7
Os01g0871300 Oryza sativa ssp. japonica HOM05D003605 ORTHO05D004292 2.2e-22 110.2 83 67.5
VMungo1383G3703 Vigna mungo HOM05D003605 ORTHO05D004292 3.7e-22 109.4 85 64.7
THA.LOC104824869 Tarenaya hassleriana HOM05D003605 ORTHO05D004292 6.4e-22 108.6 84 67.9
Zm00001eb146400 Zea mays HOM05D003605 ORTHO05D004292 1.4e-21 107.5 83 66.3
Thhalv10000093m.g Eutrema salsugineum HOM05D003605 ORTHO05D004292 2.4e-21 106.7 83 67.5
Sp4g01300 Schrenkiella parvula HOM05D003605 ORTHO05D004292 2.4e-21 106.7 83 67.5
Carub.0004s0139 Capsella rubella HOM05D003605 ORTHO05D004292 4.1e-21 105.9 83 65.1
BcaB08g35052 Brassica carinata HOM05D003605 ORTHO05D004292 7.0e-21 105.1 83 65.1
CBR_g81019 Chara braunii HOM05D003605 ORTHO05D004292 7.0e-21 105.1 82 64.6
AT2G22250 Arabidopsis thaliana HOM05D003605 ORTHO05D004292 1.2e-20 104.4 83 66.3
CARHR113480 Cardamine hirsuta HOM05D003605 ORTHO05D004292 1.2e-20 104.4 83 65.1
AL4G11730 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 1.6e-20 104.0 83 65.1
BraA04t17309Z Brassica rapa HOM05D003605 ORTHO05D004292 1.6e-20 104.0 85 63.5
BcaC02g08723 Brassica carinata HOM05D003605 ORTHO05D004292 2.0e-20 103.6 85 62.4
AUR62006827 Chenopodium quinoa HOM05D003605 ORTHO05D004292 2.0e-20 103.6 85 67.1
Aa31LG7G14510 Aethionema arabicum HOM05D003605 ORTHO05D004292 2.7e-20 103.2 85 61.2
BcaC02g08676 Brassica carinata HOM05D003605 ORTHO05D004292 2.7e-20 103.2 83 65.1
BcaC07g41087 Brassica carinata HOM05D003605 ORTHO05D004292 2.7e-20 103.2 83 62.7
VMungo1383G1191 Vigna mungo HOM05D003605 ORTHO05D004292 2.7e-20 103.2 83 66.3
Glyma.11G238200 Glycine max HOM05D003605 ORTHO05D004292 3.5e-20 102.8 84 65.5
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 4.6e-20 102.4 85 64.7
Cre02.g147302 Chlamydomonas reinhardtii HOM05D003605 ORTHO05D004292 6.0e-20 102.1 85 61.2
Phvul.001G250500 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 6.0e-20 102.1 83 65.1
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 7.8e-20 101.7 85 67.1
GSVIVG01015252001 Vitis vinifera HOM05D003605 ORTHO05D004292 7.8e-20 101.7 109 55.0
CARHR231470 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.3e-19 100.1 83 62.7
arahy.Tifrunner.gnm1.ann1.7QDM7Z Arachis hypogaea HOM05D000001 ORTHO05D000003 8.6e-19 98.2 68 75.0
Hma1.2p1_0614F.1_g189540 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 1.1e-18 97.8 187 37.4
PSO447G0276 Papaver somniferum HOM05D003605 ORTHO05D004292 1.5e-18 97.4 81 66.7
HanXRQChr05g0148451 Helianthus annuus HOM05D024719 ORTHO05D221838 2.5e-18 96.7 70 92.9
PSO210G3598 Papaver somniferum HOM05D003605 ORTHO05D004292 4.3e-18 95.9 81 65.4
MCO16G531 Micromonas commoda HOM05D003605 ORTHO05D004292 7.3e-18 95.1 84 57.1
Oeu051794.2 Olea europaea HOM05D003605 ORTHO05D004292 7.3e-18 95.1 78 64.1
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 1.5e-15 87.4 65 67.7
Mapoly0058s0104 Marchantia polymorpha HOM05D003605 ORTHO05D004292 2.2e-14 83.6 84 51.2
HanXRQChr04g0096961 Helianthus annuus HOM05D024719 ORTHO05D226150 1.1e-13 81.3 60 88.3
PRCOL_00005023 Prasinoderma coloniale HOM05D003605 ORTHO05D004292 1.4e-13 80.9 80 58.8
HanXRQChr01g0020931 Helianthus annuus HOM05D024719 ORTHO05D223472 3.9e-11 72.8 62 62.9
Haze_27183 Corylus avellana HOM05D003605 ORTHO05D004292 1.1e-08 64.7 105 40.0
HanXRQChr10g0303751 Helianthus annuus HOM05D000140 ORTHO05D000087 2.6e-07 60.1 83 63.9
CSS0002259 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 3.4e-07 59.7 72 52.8
HanXRQChr16g0503981 Helianthus annuus HOM05D000140 ORTHO05D000087 5.8e-07 58.9 83 66.3
HanXRQChr14g0431091 Helianthus annuus HOM05D054949 ORTHO05D000087 7.6e-07 58.5 60 80.0
HanXRQChr01g0028081 Helianthus annuus HOM05D054949 ORTHO05D000087 1.3e-06 57.8 60 80.0


User provided reference genes

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