Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 9.2e-75 283.5 146 100.0
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 1.1e-51 206.8 135 77.8
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 2.0e-45 186.0 143 68.5
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 2.0e-45 186.0 145 66.9
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.6e-42 176.4 146 61.6
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 4.6e-42 174.9 144 63.9
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 6.0e-42 174.5 147 63.9
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 6.0e-42 174.5 147 61.9
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 1.0e-41 173.7 148 63.5
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 1.0e-41 173.7 149 59.7
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 1.8e-41 172.9 145 64.1
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 2.3e-41 172.6 146 61.0
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 2.3e-41 172.6 141 63.1
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 3.9e-41 171.8 147 63.9
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 5.1e-41 171.4 144 61.8
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 5.1e-41 171.4 144 63.2
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 1.9e-40 169.5 149 61.7
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 3.3e-40 168.7 148 62.8
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 4.3e-40 168.3 144 61.8
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 4.3e-40 168.3 144 60.4
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 4.3e-40 168.3 144 63.2
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 7.4e-40 167.5 147 61.9
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 1.3e-39 166.8 143 61.5
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 1.6e-39 166.4 144 61.1
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 4.8e-39 164.9 145 62.1
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 6.3e-39 164.5 148 62.8
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 1.1e-38 163.7 142 62.7
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 1.4e-38 163.3 141 61.7
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 1.8e-38 162.9 144 61.1
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 2.4e-38 162.5 143 60.1
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 3.1e-38 162.2 145 60.7
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 4.1e-38 161.8 149 58.4
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 4.1e-38 161.8 150 57.3
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 4.1e-38 161.8 145 60.0
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 4.1e-38 161.8 141 61.0
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 5.3e-38 161.4 143 60.1
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 9.0e-38 160.6 149 58.4
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.0e-36 157.1 149 55.7
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.3e-36 156.8 145 60.0
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 2.2e-36 156.0 145 58.6
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.9e-36 155.6 149 55.0
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.9e-36 155.6 149 55.0
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.9e-36 155.6 146 57.5
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 5.0e-36 154.8 148 56.8
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 5.0e-36 154.8 137 59.9
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 8.5e-36 154.1 144 56.2
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.1e-35 153.7 149 54.4
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.1e-35 153.7 138 59.4
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 1.4e-35 153.3 147 53.7
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.9e-35 152.9 146 56.8
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.9e-35 152.9 146 56.8
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 7.2e-35 151.0 149 56.4
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 9.4e-35 150.6 147 59.2
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 2.1e-34 149.4 145 55.9
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 2.7e-34 149.1 147 55.1
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.7e-34 149.1 159 52.8
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 4.6e-34 148.3 149 55.0
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 4.6e-34 148.3 145 57.2
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 7.9e-34 147.5 105 66.7
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 1.4e-33 146.7 149 57.0
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.8e-33 146.4 123 59.3
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.3e-33 146.0 127 59.8
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 3.0e-33 145.6 148 54.7
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 5.1e-33 144.8 139 53.2
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.5e-32 143.3 140 59.3
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 1.5e-32 143.3 146 55.5
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 4.3e-32 141.7 141 53.2
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 7.4e-32 141.0 146 51.4
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.3e-31 140.2 146 52.7
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 2.8e-31 139.0 146 52.1
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 2.8e-31 139.0 146 52.1
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 3.7e-31 138.7 118 57.6
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.7e-31 138.7 146 56.2
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 4.8e-31 138.3 145 55.2
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 1.8e-30 136.3 147 51.7
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 1.8e-30 136.3 144 52.8
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 2.4e-30 136.0 144 51.4
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 2.4e-30 136.0 148 50.7
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 4.1e-30 135.2 149 49.7
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 4.1e-30 135.2 137 54.7
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 6.9e-30 134.4 156 50.0
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 1.2e-29 133.7 148 54.1
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 7.7e-29 131.0 147 53.7
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 1.3e-28 130.2 146 49.3
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 2.9e-28 129.0 145 48.3
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 3.8e-28 128.6 142 49.3
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 6.5e-28 127.9 146 49.3
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 8.5e-28 127.5 142 50.0
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 1.4e-27 126.7 147 50.3
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 1.4e-27 126.7 134 53.7
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 3.2e-27 125.6 105 59.0
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 7.2e-27 124.4 147 49.0
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 7.2e-27 124.4 147 49.7
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 7.2e-27 124.4 128 53.9
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 1.6e-26 123.2 143 46.2
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 2.1e-26 122.9 147 49.0
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 2.7e-26 122.5 149 47.0
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 3.6e-26 122.1 140 53.6
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.0e-25 120.6 127 55.1
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.0e-25 120.6 143 50.3
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.3e-25 119.4 118 54.2
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 1.1e-24 117.1 71 78.9
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.4e-24 115.2 143 49.0
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.3e-23 113.6 137 45.3
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 2.8e-23 112.5 132 53.8
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 3.4e-21 105.5 135 47.4
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.5e-21 105.1 150 46.7
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.5e-21 105.1 150 46.7
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.7e-20 103.2 136 48.5
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 8.5e-20 100.9 148 44.6
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 1.1e-19 100.5 131 45.0
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 6.1e-18 94.7 86 59.3
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 6.1e-18 94.7 86 59.3
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 8.2e-15 84.3 134 47.8
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 3.1e-14 82.4 92 52.2
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 1.0e-12 77.4 102 47.1
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 1.3e-12 77.0 102 47.1
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 3.8e-12 75.5 102 46.1
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 3.8e-12 75.5 102 46.1
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.1e-11 73.9 67 47.8
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 2.1e-10 69.7 99 48.5
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 2.3e-09 66.2 137 37.2
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 3.3e-08 62.4 101 37.6
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.3e-07 60.5 63 54.0
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 3.1e-06 55.8 112 38.4


User provided reference genes

Program Settings