Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0259151 Helianthus annuus HOM05D000573 ORTHO05D000425 5.8e-43 177.2 90 100.0
HanXRQChr07g0194631 Helianthus annuus HOM05D000573 ORTHO05D000425 2.4e-20 102.1 61 86.9
HanXRQChr03g0060601 Helianthus annuus HOM05D000573 ORTHO05D000425 5.2e-20 100.9 61 85.2
Oeu048537.1 Olea europaea HOM05D000573 ORTHO05D000425 1.2e-19 99.8 75 72.0
vmacro05472 Vaccinium macrocarpon HOM05D000573 ORTHO05D000425 1.5e-19 99.4 69 76.8
Rhsim10G0083100 Rhododendron simsii HOM05D000573 ORTHO05D000425 5.8e-19 97.4 60 85.0
Lsat_1_v5_gn_2_108380 Lactuca sativa HOM05D000573 ORTHO05D000425 7.6e-19 97.1 61 82.0
Cfa019448 Carpinus fangiana HOM05D000573 ORTHO05D000425 2.2e-18 95.5 67 74.6
ECA238G3901 Erigeron canadensis HOM05D000573 ORTHO05D000425 2.2e-18 95.5 61 82.0
Dinv32663 Davidia involucrata HOM05D000573 ORTHO05D000425 2.9e-18 95.1 59 84.7
TAR375G0302 Trochodendron aralioides HOM05D000573 ORTHO05D000425 2.9e-18 95.1 68 73.5
CiPaw.12G045400 Carya illinoinensis HOM05D000573 ORTHO05D000425 3.8e-18 94.7 67 73.1
Eucgr.F04260 Eucalyptus grandis HOM05D000573 ORTHO05D000425 3.8e-18 94.7 76 65.8
Thecc.01G329200 Theobroma cacao HOM05D000573 ORTHO05D000425 3.8e-18 94.7 69 71.0
ATR0579G089 Amborella trichopoda HOM05D000573 ORTHO05D000425 6.4e-18 94.0 60 80.0
Gohir.A12G118500 Gossypium hirsutum HOM05D000573 ORTHO05D000425 6.4e-18 94.0 59 81.4
Ciclev10021579m.g Citrus clementina HOM05D000573 ORTHO05D000425 8.4e-18 93.6 59 83.1
Glyma.08G175700 Glycine max HOM05D000573 ORTHO05D000425 8.4e-18 93.6 60 78.3
BcaC07g40696 Brassica carinata HOM05D000573 ORTHO05D000425 1.1e-17 93.2 74 66.2
BcaC07g42625 Brassica carinata HOM05D000573 ORTHO05D000425 1.1e-17 93.2 74 66.2
C08p36960 Brassica napus HOM05D000573 ORTHO05D000425 1.1e-17 93.2 74 66.2
BolC8t51272H Brassica oleracea HOM05D000573 ORTHO05D000425 1.1e-17 93.2 74 66.2
Duzib138G0303 Durio zibethinus HOM05D000573 ORTHO05D000425 1.1e-17 93.2 69 69.6
Migut.A00398 Erythranthe guttata HOM05D000573 ORTHO05D000425 1.1e-17 93.2 60 80.0
Lj9A610G58 Lonicera japonica HOM05D000573 ORTHO05D000425 1.1e-17 93.2 78 61.5
PGR042G2428 Punica granatum HOM05D000573 ORTHO05D000425 1.1e-17 93.2 60 78.3
CANSAT56G0351 Cannabis sativa HOM05D000573 ORTHO05D000425 1.9e-17 92.4 59 78.0
Gohir.D12G122300 Gossypium hirsutum HOM05D000573 ORTHO05D000425 1.9e-17 92.4 59 79.7
Lj3g0011456 Lotus japonicus HOM05D000573 ORTHO05D000425 1.9e-17 92.4 70 67.1
Manes.01G237200 Manihot esculenta HOM05D000573 ORTHO05D000425 1.9e-17 92.4 59 79.7
Thhalv10006151m.g Eutrema salsugineum HOM05D000573 ORTHO05D000425 2.4e-17 92.0 59 81.4
Gorai.008G133100 Gossypium raimondii HOM05D000573 ORTHO05D000425 2.4e-17 92.0 59 78.0
Psat1g001520 Pisum sativum HOM05D000573 ORTHO05D000425 2.4e-17 92.0 60 80.0
Sabra02G0132000 Salix brachista HOM05D000573 ORTHO05D000425 2.4e-17 92.0 59 78.0
VMungo1080G1329 Vigna mungo HOM05D000573 ORTHO05D000425 2.4e-17 92.0 60 76.7
EL10Ac5g11793 Beta vulgaris HOM05D000573 ORTHO05D000425 3.2e-17 91.7 71 67.6
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 3.2e-17 91.7 71 67.6
A09p54070 Brassica napus HOM05D000573 ORTHO05D000425 4.2e-17 91.3 74 64.9
BraA09t40820Z Brassica rapa HOM05D000573 ORTHO05D000425 4.2e-17 91.3 59 78.0
DCAR_020094 Daucus carota HOM05D000573 ORTHO05D000425 4.2e-17 91.3 59 78.0
DCAR_020095 Daucus carota HOM05D000573 ORTHO05D000425 4.2e-17 91.3 59 78.0
MBI04_g09826_MAGBIO Magnolia biondii HOM05D000573 ORTHO05D000425 4.2e-17 91.3 63 74.6
Prupe.4G148100 Prunus persica HOM05D000573 ORTHO05D000425 4.2e-17 91.3 58 77.6
SalBow4G0535 Salvia bowleyana HOM05D000573 ORTHO05D000425 4.2e-17 91.3 60 78.3
THA.LOC104802110 Tarenaya hassleriana HOM05D000573 ORTHO05D000425 4.2e-17 91.3 59 78.0
Phvul.005G051900 Phaseolus vulgaris HOM05D000573 ORTHO05D000425 5.4e-17 90.9 60 75.0
Atru.chr5.815 Acer truncatum HOM05D000573 ORTHO05D000425 7.1e-17 90.5 59 78.0
arahy.Tifrunner.gnm1.ann1.06014X Arachis hypogaea HOM05D000573 ORTHO05D000425 7.1e-17 90.5 75 64.0
MD05G1209400 Malus domestica HOM05D000573 ORTHO05D000425 7.1e-17 90.5 58 75.9
AT3G62000 Arabidopsis thaliana HOM05D000573 ORTHO05D000425 9.2e-17 90.1 59 76.3
RcHm_v2.0_Chr5g0027561 Rosa chinensis HOM05D000573 ORTHO05D000425 9.2e-17 90.1 58 75.9
arahy.Tifrunner.gnm1.ann1.AU4AKR Arachis hypogaea HOM05D000573 ORTHO05D000425 1.2e-16 89.7 75 64.0
Ca_03460_v3 Cicer arietinum L. HOM05D000573 ORTHO05D000425 1.2e-16 89.7 74 67.6
Potri.002G183600 Populus trichocarpa HOM05D000573 ORTHO05D000425 1.2e-16 89.7 59 78.0
QL04p071295 Quercus lobata HOM05D000573 ORTHO05D000425 1.2e-16 89.7 59 74.6
Solyc08g006830.3 Solanum lycopersicum HOM05D000573 ORTHO05D000425 1.2e-16 89.7 59 78.0
Sopen08g002780 Solanum pennellii HOM05D000573 ORTHO05D000425 1.2e-16 89.7 59 78.0
GSVIVG01027486001 Vitis vinifera HOM05D000573 ORTHO05D000425 1.2e-16 89.7 59 76.3
AL5G44620 Arabidopsis lyrata HOM05D000573 ORTHO05D000425 1.6e-16 89.4 59 74.6
CARHR172350 Cardamine hirsuta HOM05D000573 ORTHO05D000425 1.6e-16 89.4 74 63.5
Nn1g00498 Nelumbo nucifera HOM05D000573 ORTHO05D000425 1.6e-16 89.4 59 76.3
AUR62036299 Chenopodium quinoa HOM05D000573 ORTHO05D000425 2.1e-16 89.0 87 57.5
PGSC0003DMG401026272 Solanum tuberosum HOM05D000573 ORTHO05D000425 2.1e-16 89.0 59 78.0
PSO782G0926 Papaver somniferum HOM05D000573 ORTHO05D000425 2.7e-16 88.6 60 73.3
Peaxi162Scf00045g02123 Petunia axillaris HOM05D000573 ORTHO05D000425 2.7e-16 88.6 59 76.3
Nitab4.5_0012293g0010 Nicotiana tabacum HOM05D000573 ORTHO05D000425 3.5e-16 88.2 59 78.0
Carub.0005s2875 Capsella rubella HOM05D000573 ORTHO05D000425 4.6e-16 87.8 58 74.1
Cpa.g.sc57.61 Carica papaya HOM05D000573 ORTHO05D000425 4.6e-16 87.8 59 76.3
FvH4_3g16510 Fragaria vesca HOM05D000573 ORTHO05D000425 6.0e-16 87.4 58 74.1
FAN11G3936 Fragaria x ananassa HOM05D000573 ORTHO05D000425 6.0e-16 87.4 58 74.1
FAN21G2458 Fragaria x ananassa HOM05D000573 ORTHO05D000425 6.0e-16 87.4 58 74.1
FAN25G0530 Fragaria x ananassa HOM05D000573 ORTHO05D000425 6.0e-16 87.4 58 74.1
Lalb_Chr25g0285321 Lupinus albus HOM05D000573 ORTHO05D000425 7.8e-16 87.0 60 71.7
CAN.G353.19 Capsicum annuum HOM05D000573 ORTHO05D000425 1.0e-15 86.7 59 76.3
Medtr2g070410 Medicago truncatula HOM05D000573 ORTHO05D000425 1.0e-15 86.7 67 67.2
Nitab4.5_0000114g0130 Nicotiana tabacum HOM05D000573 ORTHO05D000425 1.0e-15 86.7 59 74.6
Sc01g0005230 Simmondsia chinensis HOM05D000573 ORTHO05D000425 1.3e-15 86.3 61 68.9
unitig_699.g19813 Utricularia gibba HOM05D000573 ORTHO05D000425 1.3e-15 86.3 59 74.6
PSO063G4502 Papaver somniferum HOM05D000573 ORTHO05D000425 2.3e-15 85.5 60 71.7
Cc02_g30340 Coffea canephora HOM05D000573 ORTHO05D000425 3.0e-15 85.1 59 74.6
TPR.G29763 Trifolium pratense HOM05D000573 ORTHO05D000425 3.0e-15 85.1 59 72.9
CDE12G0122 Ceratophyllum demersum HOM05D000573 ORTHO05D000425 3.9e-15 84.7 59 76.3
MELO3C016162.2 Cucumis melo HOM05D000573 ORTHO05D000425 6.6e-15 84.0 59 72.9
ClCG07G010560 Citrullus lanatus HOM05D000573 ORTHO05D000425 8.7e-15 83.6 59 72.9
HPP92_005365 Vanilla planifolia HOM05D000573 ORTHO05D000425 8.7e-15 83.6 70 61.4
Ah.02g112180 Amaranthus hybridus HOM05D000573 ORTHO05D000425 1.5e-14 82.8 82 52.4
CsaV3_4G007750 Cucumis sativus L. HOM05D000573 ORTHO05D000425 1.9e-14 82.4 59 72.9
FAN16G3481 Fragaria x ananassa HOM05D000573 ORTHO05D000425 2.5e-14 82.0 58 70.7
HPP92_005323 Vanilla planifolia HOM05D000573 ORTHO05D000425 3.3e-14 81.6 70 60.0
Aqoxy5G04388 Aquilegia oxysepala HOM05D000573 ORTHO05D000425 9.6e-14 80.1 55 74.5
Zm00001eb416160 Zea mays HOM05D000573 ORTHO05D000425 2.8e-13 78.6 61 70.5
Sed0025257 Sechium edule HOM05D000573 ORTHO05D000425 3.1e-12 75.1 59 66.1
AagrBONN_evm.TU.Sc2ySwM_340.1452 Anthoceros agrestis HOM05D000573 ORTHO05D000425 9.0e-12 73.6 71 53.5
Os08g0154000 Oryza sativa ssp. japonica HOM05D000573 ORTHO05D000425 4.4e-11 71.2 56 66.1
SGA_v2.0_scaffold27G11637 Striga asiatica HOM05D000573 ORTHO05D000425 4.4e-11 71.2 52 71.2
AL5G44610 Arabidopsis lyrata HOM05D000573 ORTHO05D000425 5.8e-11 70.9 71 59.2
AT3G61990 Arabidopsis thaliana HOM05D000573 ORTHO05D000425 5.8e-11 70.9 71 59.2
Aa31LG10G15980 Aethionema arabicum HOM05D000573 ORTHO05D000425 1.1e-09 66.6 45 71.1
HPP92_005317 Vanilla planifolia HOM05D000573 ORTHO05D000425 3.2e-09 65.1 55 60.0
CSS0037002 Camellia sinensis var. sinensis HOM05D000573 ORTHO05D000425 4.6e-08 61.2 42 71.4
Cre13.g571950 Chlamydomonas reinhardtii HOM05D000573 ORTHO05D000425 6.0e-08 60.8 53 50.9
Haze_08500 Corylus avellana HOM05D000573 ORTHO05D000425 1.7e-07 59.3 67 52.2
Pp3c4_20870 Physcomitrium patens HOM05D000573 ORTHO05D000425 2.3e-07 58.9 58 51.7
Mapoly0014s0073 Marchantia polymorpha HOM05D000573 ORTHO05D000425 6.6e-07 57.4 47 63.8
Atru.BG.73.p Acer truncatum HOM05D000573 ORTHO05D000425 3.3e-06 55.1 34 85.3


User provided reference genes

Program Settings