Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 2338.5 1176 100.0
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1850.5 1193 80.0
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1765.0 1163 77.1
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1577.4 1186 67.6
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1506.1 1166 66.1
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1499.2 1173 65.2
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1494.2 1190 64.2
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1476.5 1179 63.2
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1475.7 1179 63.1
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1475.3 1181 64.5
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1469.1 1179 62.8
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1463.0 1185 63.0
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1458.7 1178 63.1
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1458.7 1184 63.0
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1458.4 1184 63.0
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1443.7 1196 62.3
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1441.0 1189 62.2
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1438.3 1190 62.4
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1437.6 1189 62.2
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1420.6 1190 61.8
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1416.4 1188 60.8
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1414.8 1182 61.3
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1414.8 1179 61.0
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1407.9 1178 61.7
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1407.5 1180 60.3
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1407.1 1184 61.7
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1406.0 1186 60.4
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1405.2 1191 59.9
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1398.3 1177 60.2
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1395.2 1185 59.8
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1393.3 1184 60.9
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1392.5 1206 59.7
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1389.8 1183 60.9
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1385.5 1185 59.7
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1381.3 1177 59.7
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1380.9 1188 61.2
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1378.2 1183 60.1
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1376.7 1214 59.0
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1376.7 1176 59.8
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1373.6 1183 60.0
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1373.2 1183 60.0
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1370.9 1203 59.8
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1370.5 1185 58.9
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1363.2 1180 59.5
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1358.6 1185 58.7
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1356.3 1195 58.0
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1356.3 1185 59.7
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1355.9 1200 57.4
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1354.0 1180 59.7
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1352.8 1187 59.6
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1352.4 1184 58.2
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1352.0 1183 59.2
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1352.0 1196 58.7
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1349.3 1190 58.8
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1344.7 1186 57.9
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1342.0 1178 57.8
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1342.0 1198 58.2
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1341.6 1187 59.0
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1338.9 1183 58.6
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1333.5 1182 58.7
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1330.5 1181 56.8
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1328.5 1181 57.0
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1327.4 1187 57.5
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1322.0 1181 57.2
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1320.8 1096 62.1
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1313.5 1210 57.1
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1312.4 1183 58.2
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1311.2 1181 57.0
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1310.4 1316 53.0
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1308.5 1194 56.9
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1306.6 1195 57.0
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1304.7 1045 63.9
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1303.9 1193 57.0
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1302.0 1201 57.0
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1295.0 1192 57.0
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1290.0 1067 62.2
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1287.7 1192 56.7
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1274.2 1028 64.1
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1273.8 1183 56.7
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1272.3 1195 55.5
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1271.1 1181 56.6
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1270.4 1192 56.0
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1265.0 1207 55.8
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1263.4 1183 56.1
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1256.9 1209 53.1
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1253.4 1081 60.3
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1248.4 1198 54.8
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1247.3 1192 53.7
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1224.2 1186 55.9
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1204.9 1184 54.2
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1165.2 1055 57.8
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1127.9 1039 56.7
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 8.0e-312 1074.7 1224 47.9
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 3.5e-281 972.2 1039 51.2
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 1.9e-250 870.2 1218 41.5
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 4.3e-247 859.0 1200 41.9
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 2.4e-245 853.2 694 63.8
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 2.3e-240 836.6 780 56.7
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 1.4e-234 817.4 730 57.9
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 1.1e-229 801.2 1203 39.6
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 1.8e-221 773.9 749 54.1
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 5.1e-208 729.2 713 52.0
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 1.2e-204 718.0 694 53.7
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 5.3e-197 692.6 832 49.0
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 2.7e-172 610.5 512 59.8
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 7.2e-170 602.4 458 66.8
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 1.3e-166 591.7 794 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 1.1e-162 578.6 774 42.4
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 8.0e-153 545.8 443 62.3
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 1.1e-149 535.4 1354 29.0
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 6.2e-121 439.9 438 54.1
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 4.2e-117 427.2 450 51.6
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 4.2e-109 400.6 410 51.7
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 3.9e-99 367.5 676 33.3
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 3.4e-87 327.8 358 50.0
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 8.8e-67 260.0 286 48.3
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 2.6e-50 205.3 226 49.6
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 2.4e-48 198.7 348 37.4
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 1.2e-44 186.4 1258 21.5
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 7.5e-42 177.2 169 58.0
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 5.0e-38 164.5 117 65.8
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 2.6e-34 152.1 118 62.7
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 2.7e-31 142.1 130 53.1
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 6.6e-22 110.9 378 28.0


User provided reference genes

Program Settings