Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.1e-160 570.5 406 100.0
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.5e-50 204.5 403 50.1
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.2e-40 170.2 417 38.4
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 8.4e-25 119.0 534 28.7
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 7.1e-24 115.9 509 39.3
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 3.3e-21 107.1 422 32.2
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.8e-20 104.0 276 37.3
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.2e-20 102.8 262 33.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.8e-19 101.3 529 29.1
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 6.9e-19 99.4 463 34.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 4.5e-18 96.7 287 33.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.8e-18 96.3 274 33.9
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 9.9e-18 95.5 298 32.9
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.7e-17 94.7 275 33.8
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.9e-17 94.0 275 33.5
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 3.8e-17 93.6 295 34.6
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 5.4e-16 89.7 440 31.8
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 7.1e-16 89.4 505 36.2
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 9.3e-16 89.0 498 32.1
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 9.3e-16 89.0 439 28.2
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 2.1e-15 87.8 451 25.7
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.7e-15 87.4 315 33.0
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.5e-15 87.0 237 36.3
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 7.9e-15 85.9 228 34.2
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.8e-14 84.7 115 46.1
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.0e-14 84.0 244 35.2
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 6.7e-14 82.8 274 33.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.1e-13 82.0 453 30.2
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.1e-13 82.0 333 28.8
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-13 82.0 309 31.1
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.5e-13 80.9 115 48.7
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 4.3e-13 80.1 280 32.1
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 5.6e-13 79.7 204 33.3
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 5.6e-13 79.7 219 35.2
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 9.6e-13 79.0 307 30.9
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.3e-12 78.6 120 43.3
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.3e-12 78.6 207 33.3
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.3e-12 78.6 305 32.1
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.6e-12 78.2 88 53.4
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 3.7e-12 77.0 191 33.5
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 3.7e-12 77.0 92 47.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 3.7e-12 77.0 277 32.1
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 3.7e-12 77.0 280 31.1
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.7e-12 77.0 281 28.5
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.8e-12 76.6 187 33.2
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.8e-12 76.6 162 34.6
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 6.2e-12 76.3 186 33.9
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 6.2e-12 76.3 291 31.3
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 6.2e-12 76.3 269 33.5
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 8.1e-12 75.9 297 29.6
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.1e-11 75.5 95 49.5
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.1e-11 75.5 105 49.5
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-11 75.5 501 25.3
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.1e-11 75.5 98 48.0
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.4e-11 75.1 88 52.3
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-11 75.1 216 34.3
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.8e-11 74.7 262 30.2
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-11 74.7 261 32.2
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-11 74.7 520 28.8
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.8e-11 74.7 263 31.9
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 4.0e-11 73.6 140 44.3
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 4.0e-11 73.6 306 29.1
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 4.0e-11 73.6 485 30.5
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 5.3e-11 73.2 105 45.7
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 6.9e-11 72.8 88 48.9
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.2e-10 72.0 277 30.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.2e-10 72.0 103 45.6
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.2e-10 72.0 281 32.7
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.5e-10 71.6 188 33.0
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.5e-10 71.6 188 33.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.5e-10 71.6 117 39.3
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.5e-10 71.6 94 44.7
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.5e-10 71.6 464 27.6
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.5e-10 71.6 106 40.6
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.0e-10 71.2 253 30.8
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.0e-10 71.2 520 28.1
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.6e-10 70.9 258 31.0
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.6e-10 70.9 258 31.0
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 3.4e-10 70.5 310 28.4
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 3.4e-10 70.5 118 40.7
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 4.5e-10 70.1 107 44.9
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.5e-10 70.1 90 44.4
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 7.6e-10 69.3 476 24.6
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.6e-10 69.3 102 45.1
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 7.6e-10 69.3 79 49.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.0e-09 68.9 176 34.1
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.0e-09 68.9 103 44.7
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.0e-09 68.9 185 35.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.3e-09 68.6 274 29.6
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.3e-09 68.6 117 37.6
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.3e-09 68.6 192 32.8
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.7e-09 68.2 192 33.9
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.2e-09 67.8 89 44.9
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.2e-09 67.8 233 29.6
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.2e-09 67.8 252 30.6
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.2e-09 67.8 258 30.6
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.2e-09 67.8 258 30.6
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 2.2e-09 67.8 182 34.1
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.2e-09 67.8 291 29.2
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.8e-09 67.0 89 44.9
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 3.8e-09 67.0 286 30.1
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.8e-09 67.0 186 34.9
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 8.4e-09 65.9 250 32.4
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 8.4e-09 65.9 181 32.0
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.1e-08 65.5 274 29.2
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-08 65.5 264 31.1
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-08 65.5 117 42.7
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.1e-08 65.5 204 31.9
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.4e-08 65.1 189 32.8
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.4e-08 65.1 299 29.8
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.4e-08 65.1 186 33.9
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.5e-08 64.3 262 31.3
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.5e-08 64.3 112 42.0
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.5e-08 64.3 54 61.1
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.5e-08 64.3 72 52.8
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 3.2e-08 63.9 214 32.7
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 4.2e-08 63.5 560 25.5
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 5.5e-08 63.2 562 25.1
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 9.3e-08 62.4 264 30.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 9.3e-08 62.4 258 31.0
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 9.3e-08 62.4 197 33.0
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 9.3e-08 62.4 184 30.4
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 9.3e-08 62.4 184 30.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 9.3e-08 62.4 250 30.0
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.2e-07 62.0 103 38.8
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.2e-07 62.0 102 41.2
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.2e-07 62.0 179 32.4
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.6e-07 61.6 81 50.6
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.1e-07 61.2 89 42.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.7e-07 60.8 247 29.1
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.5e-07 60.5 146 35.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 4.6e-07 60.1 188 32.4
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.8e-06 58.2 105 36.2
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 3.9e-06 57.0 250 27.2
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 3.9e-06 57.0 242 29.8
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 8.7e-06 55.8 484 25.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 8.7e-06 55.8 549 35.0


User provided reference genes

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