Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 7.3e-99 364.0 197 100.0
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 7.6e-56 221.1 245 57.6
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 4.0e-41 172.2 232 55.2
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.5e-35 153.7 233 50.6
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 8.5e-31 137.9 217 48.8
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.4e-30 137.1 221 45.7
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 4.2e-30 135.6 235 48.5
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 5.5e-30 135.2 214 46.3
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 9.4e-30 134.4 234 43.6
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 6.1e-29 131.7 227 45.8
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 6.1e-29 131.7 216 47.7
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 6.1e-29 131.7 216 46.3
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.4e-28 130.6 226 44.7
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.3e-28 129.8 225 47.6
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.3e-28 129.8 223 44.8
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 2.3e-28 129.8 235 48.5
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 6.7e-28 128.3 208 47.1
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 8.8e-28 127.9 170 51.8
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.5e-27 126.3 244 43.9
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.4e-27 124.8 236 43.6
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 9.7e-27 124.4 212 44.8
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.3e-26 124.0 212 43.9
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.7e-26 123.6 223 44.8
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 4.8e-26 122.1 253 41.9
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 1.1e-25 120.9 254 39.4
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.8e-25 120.2 206 43.2
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 2.4e-25 119.8 207 46.4
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 5.3e-25 118.6 229 41.0
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 6.9e-25 118.2 260 39.6
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 9.1e-25 117.9 207 45.9
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.5e-24 117.1 213 44.1
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 1.5e-24 117.1 256 39.1
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 2.0e-24 116.7 231 41.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 3.4e-24 115.9 220 44.1
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 3.4e-24 115.9 235 40.4
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.4e-24 115.9 255 40.0
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 4.5e-24 115.5 221 43.0
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 5.9e-24 115.2 212 44.3
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 5.9e-24 115.2 177 46.3
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 1.0e-23 114.4 225 44.4
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.0e-23 114.4 180 48.9
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.3e-23 114.0 215 42.8
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 1.3e-23 114.0 227 41.4
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 2.9e-23 112.8 233 42.9
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 2.9e-23 112.8 183 47.0
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 3.8e-23 112.5 179 46.4
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 5.0e-23 112.1 180 46.1
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 5.0e-23 112.1 236 41.5
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 6.5e-23 111.7 200 47.0
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 8.5e-23 111.3 222 41.0
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 8.5e-23 111.3 235 39.1
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.1e-22 110.9 177 46.9
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.4e-22 110.5 248 39.9
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 1.9e-22 110.2 255 38.4
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 4.2e-22 109.0 235 43.8
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 9.4e-22 107.8 236 39.0
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 2.1e-21 106.7 204 42.6
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.6e-21 105.9 166 48.2
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 4.7e-21 105.5 228 39.9
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 6.1e-21 105.1 231 37.2
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 6.1e-21 105.1 246 39.0
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 7.9e-21 104.8 221 39.8
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.0e-20 104.4 183 45.9
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.4e-20 104.0 212 38.7
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.8e-20 103.6 242 39.7
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 1.8e-20 103.6 223 39.9
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 2.3e-20 103.2 239 42.7
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 8.8e-20 101.3 259 40.2
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 8.8e-20 101.3 228 40.4
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.1e-19 100.9 236 42.4
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.1e-19 100.9 247 37.2
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.5e-19 100.5 218 42.7
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.0e-19 100.1 236 41.1
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 3.3e-19 99.4 215 43.7
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 3.3e-19 99.4 223 40.4
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 4.4e-19 99.0 232 40.1
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 5.7e-19 98.6 226 38.1
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 7.4e-19 98.2 232 38.4
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 9.7e-19 97.8 224 37.9
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.7e-18 97.1 237 38.4
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.7e-18 97.1 255 34.5
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 2.2e-18 96.7 224 37.9
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 2.2e-18 96.7 224 37.9
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.2e-18 96.7 235 38.3
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 2.8e-18 96.3 229 40.6
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.7e-18 95.9 186 43.5
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.8e-18 95.5 205 40.0
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 6.3e-18 95.1 224 37.9
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 6.3e-18 95.1 224 37.9
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.3e-18 95.1 186 43.0
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.3e-18 95.1 186 43.5
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 6.3e-18 95.1 223 37.2
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 8.2e-18 94.7 205 40.0
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 8.2e-18 94.7 217 40.1
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.1e-17 94.4 216 38.4
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 1.4e-17 94.0 226 37.2
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.8e-17 93.6 203 37.4
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.8e-17 93.6 203 39.4
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.8e-17 93.6 219 38.8
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 3.1e-17 92.8 172 40.7
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 4.1e-17 92.4 226 38.9
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-16 90.9 235 36.2
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.2e-16 90.9 240 35.0
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.5e-16 90.5 225 36.9
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.5e-16 90.5 225 36.9
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 2.0e-16 90.1 238 37.8
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 7.7e-16 88.2 228 37.3
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 7.7e-16 88.2 157 41.4
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 7.7e-16 88.2 175 41.1
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 7.7e-16 88.2 184 40.2
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.0e-15 87.8 175 40.6
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.8e-15 85.9 238 34.9
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 3.8e-15 85.9 238 35.3
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 5.0e-15 85.5 242 33.5
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 6.5e-15 85.1 190 38.9
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 8.5e-15 84.7 178 38.2
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 8.5e-15 84.7 178 38.2
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 8.5e-15 84.7 178 38.2
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 8.5e-15 84.7 178 38.8
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 8.5e-15 84.7 214 36.4
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.1e-14 84.3 214 35.0
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.9e-14 83.6 237 34.6
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.2e-14 82.8 244 35.7
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 4.2e-14 82.4 208 38.9
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 5.5e-14 82.0 178 38.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 5.5e-14 82.0 215 38.1
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.2e-14 81.6 205 37.6
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 1.2e-13 80.9 216 38.4
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.6e-13 80.5 193 36.8
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 2.1e-13 80.1 153 45.1
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.1e-13 80.1 193 36.8
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 3.6e-13 79.3 250 35.6
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 4.7e-13 79.0 234 34.6
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.7e-13 79.0 205 37.1
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 6.1e-13 78.6 218 34.9
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.0e-12 77.8 180 40.0
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 2.3e-12 76.6 198 35.9
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.0e-12 76.3 202 34.7
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 5.2e-12 75.5 172 37.2
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 8.8e-12 74.7 231 33.8
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.5e-11 73.9 172 44.8
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.0e-11 73.6 206 35.4
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 2.0e-11 73.6 213 35.7
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 9.7e-11 71.2 231 35.1
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.3e-10 70.9 223 32.7
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 1.7e-10 70.5 179 36.9
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 5.3e-09 65.5 158 38.6
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.2e-08 64.3 110 43.6
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.6e-08 63.2 117 45.3
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 7.7e-08 61.6 73 58.9
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 1.3e-07 60.8 157 35.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 3.8e-07 59.3 139 38.1
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.9e-06 57.0 139 39.6
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.5e-06 56.6 137 37.2
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 4.2e-06 55.8 220 30.9
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 5.5e-06 55.5 168 37.5


User provided reference genes

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