Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 4.5e-158 561.2 288 100.0
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 7.0e-151 537.3 307 92.2
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 9.5e-148 526.9 323 87.6
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 9.5e-148 526.9 323 87.6
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 9.5e-148 526.9 323 87.6
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 9.5e-148 526.9 323 87.6
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-114 416.8 268 84.7
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 3.4e-113 412.1 307 75.9
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 3.4e-113 412.1 320 71.2
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 8.4e-112 407.5 322 71.1
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 6.0e-110 401.4 320 69.1
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 6.2e-107 391.3 326 68.1
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 6.2e-107 391.3 326 68.1
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 6.2e-107 391.3 326 68.1
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 6.2e-107 391.3 326 68.1
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.0e-106 388.7 323 66.6
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.0e-106 388.7 323 66.6
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 9.0e-106 387.5 326 67.5
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 5.8e-105 384.8 321 67.6
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 5.4e-103 378.3 320 65.9
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 7.1e-103 377.9 321 64.2
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 7.1e-103 377.9 321 64.2
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.1e-102 376.3 319 66.1
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.1e-102 376.3 319 66.1
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 2.5e-100 369.4 321 62.9
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 8.1e-99 364.4 321 63.2
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-98 362.8 324 66.7
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 7.6e-97 357.8 338 63.0
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 4.9e-96 355.1 326 60.7
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 6.4e-96 354.8 326 60.7
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 6.4e-96 354.8 326 60.7
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-95 352.8 324 60.5
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 4.2e-95 352.1 326 60.4
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 4.2e-95 352.1 322 61.2
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-93 347.1 325 59.7
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 1.9e-92 343.2 323 59.4
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.2e-87 325.9 277 63.9
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 7.1e-87 324.7 283 62.9
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 2.1e-86 323.2 317 57.7
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.3e-85 319.7 323 57.0
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.1e-84 317.4 274 67.5
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.4e-84 314.7 284 63.0
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 8.5e-80 301.2 302 57.3
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 9.7e-68 261.2 182 80.8
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 4.8e-67 258.8 276 55.4
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 4.7e-62 242.3 189 70.4
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 1.1e-60 237.7 173 72.8
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 1.5e-60 237.3 257 52.9
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-60 236.9 198 63.1
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 3.7e-59 232.6 222 61.7
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 1.1e-58 231.1 185 68.6
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-58 229.9 170 75.3
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.6e-57 226.5 248 52.4
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.9e-56 223.0 214 59.3
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 5.0e-56 222.2 175 70.3
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 5.0e-56 222.2 175 70.3
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 6.5e-56 221.9 198 67.7
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.2e-55 219.2 258 53.9
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.7e-51 206.1 254 47.6
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.7e-51 206.1 254 47.6
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.7e-51 206.1 254 47.6
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.7e-51 206.1 254 47.6
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.7e-51 206.1 254 47.6
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 4.8e-51 205.7 199 62.3
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-50 204.1 131 84.0
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 7.7e-49 198.4 177 67.8
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.5e-47 194.1 307 42.0
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 2.5e-47 193.4 128 82.0
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 1.8e-45 187.2 208 55.3
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 1.8e-45 187.2 166 63.3
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 9.1e-42 174.9 112 85.7
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 9.1e-42 174.9 129 65.1
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.2e-41 174.5 252 44.8
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 4.5e-41 172.6 181 58.0
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.2e-40 170.2 79 100.0
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 5.0e-40 169.1 286 38.5
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 5.5e-39 165.6 147 63.3
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.2e-39 165.2 106 73.6
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.1e-38 163.7 112 68.8
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.0e-37 161.4 91 89.0
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.0e-37 159.8 77 90.9
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.0e-37 159.8 77 90.9
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 4.0e-37 159.5 79 87.3
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.5e-36 157.5 103 72.8
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.4e-36 156.4 180 55.0
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.2e-35 153.7 137 56.9
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.2e-35 153.7 103 70.9
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.3e-35 152.1 78 85.9
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 4.5e-33 146.0 95 75.8
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-32 144.1 68 100.0
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.3e-32 143.7 171 55.0
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 6.6e-32 142.1 122 60.7
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.1e-31 141.4 147 55.8
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.1e-31 141.4 294 35.0
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.3e-31 139.4 166 56.0
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-30 137.9 118 65.3
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.6e-30 136.3 257 38.1
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 1.8e-29 134.0 158 57.6
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 5.2e-29 132.5 80 80.0
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 5.7e-28 129.0 139 54.0
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 1.3e-27 127.9 215 46.5
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-25 121.3 97 66.0
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.6e-22 110.9 81 64.2
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 8.0e-22 108.6 59 79.7
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 2.3e-21 107.1 53 92.5
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 3.1e-21 106.7 272 36.4
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 6.8e-21 105.5 66 78.8
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.2e-20 104.8 81 60.5
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.5e-20 104.4 53 90.6
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.7e-19 100.9 70 67.1
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 4.1e-18 96.3 93 65.6
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.6e-17 94.4 85 56.5
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.0e-17 94.0 70 62.9
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.0e-16 91.7 85 55.3
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.3e-16 91.3 174 36.8
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.3e-15 86.3 173 37.6
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 4.3e-15 86.3 41 82.9
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 5.6e-15 85.9 170 38.8
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.6e-14 84.3 67 62.7
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 3.6e-14 83.2 84 63.1
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 5.2e-13 79.3 93 60.2
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 1.4e-10 71.2 91 50.5
Nitab4.5_0007979g0090 Nicotiana tabacum HOM05D005034 ORTHO05D006234 7.8e-09 65.5 101 41.6
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.3e-07 60.1 50 76.0
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.1e-06 57.4 73 49.3
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.7e-06 56.2 57 50.9


User provided reference genes

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