Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 5.2e-79 297.7 159 100.0
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 5.2e-79 297.7 159 100.0
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 5.2e-79 297.7 159 100.0
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 5.2e-79 297.7 159 100.0
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 5.2e-79 297.7 159 100.0
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 5.2e-79 297.7 159 100.0
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 5.2e-79 297.7 159 100.0
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 5.2e-79 297.7 159 100.0
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 1.4e-76 289.7 157 96.8
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 1.4e-76 289.7 157 96.8
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 2.4e-76 288.9 157 97.5
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 5.9e-75 284.3 157 94.9
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 1.0e-74 283.5 157 94.9
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 1.0e-74 283.5 157 94.9
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 1.0e-74 283.5 157 94.9
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 1.0e-74 283.5 157 94.9
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 1.0e-74 283.5 157 94.9
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 1.0e-74 283.5 157 94.9
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 1.0e-74 283.5 157 94.9
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.7e-74 282.7 157 95.5
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 2.9e-74 282.0 157 94.3
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 2.9e-74 282.0 157 94.3
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 3.8e-74 281.6 157 94.3
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 3.8e-74 281.6 156 95.5
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 3.8e-74 281.6 156 95.5
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 3.8e-74 281.6 156 95.5
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 3.8e-74 281.6 156 95.5
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 3.8e-74 281.6 156 95.5
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 3.8e-74 281.6 156 95.5
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 5.0e-74 281.2 157 94.3
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 5.0e-74 281.2 157 94.3
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 1.9e-73 279.3 154 96.1
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 1.9e-73 279.3 154 96.1
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 2.5e-73 278.9 158 93.7
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 3.2e-73 278.5 157 93.6
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 5.5e-73 277.7 156 85.3
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 9.4e-73 276.9 158 92.4
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 9.4e-73 276.9 150 97.3
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.6e-72 276.2 158 94.3
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 2.7e-72 275.4 157 91.7
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 2.7e-72 275.4 157 91.7
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-72 275.0 150 96.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 3.6e-72 275.0 150 96.7
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-72 275.0 150 96.7
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-72 275.0 150 96.7
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-72 275.0 150 96.7
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-72 275.0 150 96.7
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-72 275.0 150 96.7
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.0e-71 273.5 157 91.7
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.0e-71 273.5 157 91.7
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 1.8e-71 272.7 150 96.7
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 1.8e-71 272.7 150 96.7
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 1.8e-71 272.7 150 96.0
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 2.6e-70 268.9 157 91.1
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 3.7e-69 265.0 157 90.4
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.4e-68 263.1 158 81.0
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 2.4e-68 262.3 157 89.8
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 2.4e-68 262.3 157 89.8
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 7.0e-68 260.8 150 92.7
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 7.7e-67 257.3 155 87.1
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 1.6e-64 249.6 157 86.0
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 3.0e-63 245.4 159 79.2
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 4.0e-63 245.0 157 85.4
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.4e-62 241.9 144 81.2
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 2.2e-61 239.2 150 79.3
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-58 229.9 132 93.9
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.3e-58 229.2 158 81.0
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-57 226.9 132 93.2
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-57 226.9 132 93.2
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-57 226.9 132 93.2
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-57 224.6 128 84.4
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 3.0e-55 218.8 121 96.7
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 3.4e-54 215.3 147 76.2
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 3.4e-54 215.3 155 67.7
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 7.5e-54 214.2 123 83.7
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 2.9e-53 212.2 119 97.5
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.7e-53 211.8 140 85.0
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 3.2e-52 208.8 141 75.9
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.2e-51 206.8 123 91.9
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-51 206.5 130 87.7
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 5.0e-50 201.4 94 100.0
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 8.6e-50 200.7 146 78.1
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.9e-49 199.5 94 98.9
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 1.9e-49 199.5 94 98.9
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.9e-49 199.5 94 98.9
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.3e-49 198.7 118 91.5
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.3e-49 198.7 118 91.5
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 2.8e-48 195.7 139 73.4
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 4.7e-48 194.9 111 94.6
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.4e-45 184.5 89 96.6
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 6.4e-45 184.5 89 95.5
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 8.3e-45 184.1 152 65.8
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 7.8e-43 177.6 100 96.0
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 1.0e-42 177.2 86 94.2
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-42 176.8 86 94.2
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 1.3e-42 176.8 86 94.2
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 2.3e-42 176.0 84 96.4
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 2.3e-42 176.0 84 96.4
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 2.3e-42 176.0 87 93.1
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.0e-42 175.6 84 96.4
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 5.0e-42 174.9 98 96.9
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 6.6e-42 174.5 86 93.0
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 8.6e-42 174.1 83 96.4
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.1e-40 169.5 138 64.5
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.6e-40 168.7 91 86.8
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.7e-40 168.3 83 92.8
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 1.4e-39 166.8 97 82.5
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.5e-38 163.3 87 86.2
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 4.4e-38 161.8 92 84.8
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 7.5e-38 161.0 114 70.2
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.3e-37 160.2 94 81.9
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.2e-37 159.5 75 97.3
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 3.7e-37 158.7 84 84.5
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-36 157.1 92 81.5
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-36 157.1 92 81.5
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-36 157.1 92 81.5
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 1.2e-35 153.7 149 53.0
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 3.5e-35 152.1 91 80.2
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 6.0e-35 151.4 87 80.5
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-34 149.4 76 93.4
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 8.6e-34 147.5 89 79.8
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 5.6e-33 144.8 83 83.1
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 8.9e-31 137.5 105 69.5
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 8.9e-31 137.5 150 51.3
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 1.2e-30 137.1 77 83.1
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 9.9e-30 134.0 117 64.1
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.9e-28 129.8 64 93.8
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 9.2e-28 127.5 60 98.3
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 2.7e-27 125.9 78 80.8
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 4.6e-27 125.2 61 95.1
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 4.3e-25 118.6 60 90.0
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 7.3e-25 117.9 158 46.8
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.5e-22 110.2 76 73.7
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 4.4e-22 108.6 89 58.4
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.7e-19 99.4 76 65.8
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 4.6e-19 98.6 81 59.3
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.3e-18 96.3 70 64.3
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 8.7e-18 94.4 46 95.7
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 2.5e-17 92.8 46 93.5
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-17 92.4 45 95.6
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 2.1e-16 89.7 45 93.3
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 3.6e-16 89.0 66 71.2
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.2e-16 88.2 64 68.8
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 8.1e-16 87.8 43 95.3
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 1.4e-15 87.0 43 95.3
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 5.3e-15 85.1 56 69.6
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 5.3e-15 85.1 114 44.7
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.0e-14 83.2 41 95.1
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 2.2e-13 79.7 55 69.1
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 8.4e-13 77.8 37 94.6
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 2.4e-12 76.3 40 92.5
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 4.2e-12 75.5 49 73.5
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 5.4e-12 75.1 38 89.5
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 2.1e-11 73.2 62 58.1
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 3.5e-11 72.4 39 79.5
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 1.7e-10 70.1 52 65.4
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 2.0e-06 56.6 25 100.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 4.5e-06 55.5 121 38.8
ClCG08G006540 Citrullus lanatus HOM05D000533 ORTHO05D006151 5.8e-06 55.1 29 86.2


User provided reference genes

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