Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1088.6 551 100.0
HanXRQChr09g0258471 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1088.6 551 100.0
HanXRQChr15g0465411 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1088.6 551 100.0
HanXRQChr15g0465481 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1088.6 551 100.0
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1088.6 551 100.0
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1088.6 551 100.0
HanXRQChr03g0087621 Helianthus annuus HOM05D001070 ORTHO05D005132 0.0e+00 1077.8 551 99.3
HanXRQChr00c0336g0573711 Helianthus annuus HOM05D001070 ORTHO05D005132 2.1e-289 998.4 551 93.6
HanXRQChr00c0703g0576911 Helianthus annuus HOM05D001070 ORTHO05D005132 7.7e-231 803.9 410 100.0
HanXRQChr13g0413611 Helianthus annuus HOM05D001070 ORTHO05D005132 8.9e-195 684.1 355 98.0
Hma1.2p1_0096F.1_g047620 Hydrangea macrophylla HOM05D001070 ORTHO05D005132 1.4e-155 553.9 626 52.6
Solyc00g500042.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.1e-136 491.1 621 48.6
Peaxi162Scf01305g00038 Petunia axillaris HOM05D001070 ORTHO05D005132 5.5e-136 488.8 623 49.1
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 4.8e-132 475.7 627 49.3
Solyc00g500125.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.9e-128 463.8 583 49.6
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 1.2e-127 461.1 600 47.3
HanXRQChr17g0569771 Helianthus annuus HOM05D001070 ORTHO05D005132 1.5e-114 417.5 230 95.7
Nn1g08629 Nelumbo nucifera HOM05D001070 ORTHO05D005132 2.0e-106 390.6 596 43.8
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.9e-104 384.0 618 43.2
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 8.8e-102 375.2 588 43.4
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 6.1e-87 325.9 609 38.1
BraSC143t45654Z Brassica rapa HOM05D001070 ORTHO05D005132 1.5e-85 321.2 607 38.9
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 1.5e-85 321.2 607 38.9
arahy.Tifrunner.gnm1.ann1.B1X1LX Arachis hypogaea HOM05D001070 ORTHO05D005132 4.4e-85 319.7 608 39.8
BolSC45t60903H Brassica oleracea HOM05D001070 ORTHO05D005132 2.7e-82 310.5 607 38.6
Migut.D01247 Erythranthe guttata HOM05D001070 ORTHO05D005132 4.5e-82 309.7 511 42.5
BcaB03g16407 Brassica carinata HOM05D001070 ORTHO05D005132 8.6e-81 305.4 604 38.6
BolSC35t60686H Brassica oleracea HOM05D001070 ORTHO05D005132 7.3e-80 302.4 603 38.3
Hund30366 Selenicereus undatus HOM05D001070 ORTHO05D005132 5.2e-78 296.2 646 35.6
Hund08794 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund12717 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund12844 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund23969 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund27677 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund27830 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund27882 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28329 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28437 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28449 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28598 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28612 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28879 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28938 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28947 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28962 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28978 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29178 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29187 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29245 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29246 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29252 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29274 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29278 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29282 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29286 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29287 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29315 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29440 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29712 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29754 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund29819 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund30035 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund30119 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund30176 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.9e-78 295.4 647 35.9
Hund28953 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.2e-77 295.0 647 35.9
ClCG11G009240 Citrullus lanatus HOM05D001070 ORTHO05D005132 6.0e-74 282.7 351 50.1
PSO063G4510 Papaver somniferum HOM05D001070 ORTHO05D005132 3.9e-73 280.0 368 47.0
SalBow1G2240 Salvia bowleyana HOM05D001070 ORTHO05D005132 4.0e-70 270.0 427 43.3
C07p33480 Brassica napus HOM05D001070 ORTHO05D005132 1.9e-67 261.2 480 39.2
Lju5009P0T28 Lonicera japonica HOM05D001070 ORTHO05D005132 7.8e-66 255.8 520 39.0
Medtr7g021690 Medicago truncatula HOM05D001070 ORTHO05D005132 1.1e-62 245.4 567 34.0
BolSC29t60512H Brassica oleracea HOM05D001070 ORTHO05D005132 3.2e-59 233.8 388 41.5
C02p28800 Brassica napus HOM05D001070 ORTHO05D005132 1.6e-58 231.5 383 41.3
Hund28952 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.8e-55 220.7 609 32.2
C05p53850 Brassica napus HOM05D001070 ORTHO05D005132 1.3e-52 211.8 351 41.3
RcHm_v2.0_Chr7g0212321 Rosa chinensis HOM05D001070 ORTHO05D005132 1.3e-52 211.8 300 46.7
Hund29432 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.2e-50 205.3 596 32.0
HanXRQChr08g0222871 Helianthus annuus HOM05D001070 ORTHO05D005132 7.8e-50 202.6 98 99.0
Hund30040 Selenicereus undatus HOM05D001070 ORTHO05D005132 7.8e-50 202.6 585 32.0
Hund28975 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.3e-49 201.8 604 31.8
Hund29088 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.3e-49 201.8 604 31.8
Hund29253 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.3e-49 201.8 604 31.8
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 1.7e-49 201.4 191 59.2
Hund29025 Selenicereus undatus HOM05D001070 ORTHO05D005132 6.6e-49 199.5 577 32.2
Hund28911 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.4e-45 187.2 559 32.0
Lj2P1238T100 Lonicera japonica HOM05D001070 ORTHO05D005132 1.1e-40 172.2 256 43.4
MELO3C027053.2 Cucumis melo HOM05D001070 ORTHO05D005132 7.3e-40 169.5 156 60.9
EL10Ac1g01959 Beta vulgaris HOM05D001070 ORTHO05D005132 1.8e-38 164.9 327 36.7
PSO357G0618 Papaver somniferum HOM05D001070 ORTHO05D005132 5.8e-37 159.8 301 39.5
EL10As1g23055 Beta vulgaris HOM05D001070 ORTHO05D005132 1.0e-33 149.1 292 37.7
BolC2t10603H Brassica oleracea HOM05D001070 ORTHO05D005132 9.0e-30 136.0 307 36.2
Peaxi162Scf00030g02112 Petunia axillaris HOM05D001070 ORTHO05D005132 9.0e-30 136.0 266 39.5
BolSC37t60799H Brassica oleracea HOM05D001070 ORTHO05D005132 9.9e-29 132.5 265 38.5
Nitab4.5_0006409g0070 Nicotiana tabacum HOM05D001070 ORTHO05D010350 3.8e-28 130.6 170 49.4
ClCG11G009250 Citrullus lanatus HOM05D001070 ORTHO05D005132 7.1e-27 126.3 158 48.1
CAN.G1139.17 Capsicum annuum HOM05D001070 ORTHO05D005132 1.2e-26 125.6 126 54.0
Peaxi162Scf00080g00527 Petunia axillaris HOM05D001070 ORTHO05D036944 2.1e-26 124.8 162 48.1
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.7e-25 119.8 106 57.5
Gohir.A09G045792 Gossypium hirsutum HOM05D001070 ORTHO05D005132 8.7e-25 119.4 265 36.2
Gohir.D11G334275 Gossypium hirsutum HOM05D001070 ORTHO05D005132 5.6e-24 116.7 277 35.4
Gohir.1Z049494 Gossypium hirsutum HOM05D001070 ORTHO05D005132 7.4e-24 116.3 277 34.7
Gohir.A09G039280 Gossypium hirsutum HOM05D001070 ORTHO05D005132 1.6e-23 115.2 269 33.8
Gohir.D11G237240 Gossypium hirsutum HOM05D001070 ORTHO05D005132 8.2e-23 112.8 277 34.7
Medtr2g039370 Medicago truncatula HOM05D001070 ORTHO05D005132 3.1e-22 110.9 147 44.9
arahy.Tifrunner.gnm1.ann1.1Y8W5R Arachis hypogaea HOM05D001070 ORTHO05D018510 4.0e-22 110.5 88 62.5
Solyc11g021240.3 Solanum lycopersicum HOM05D001070 ORTHO05D005132 4.0e-22 110.5 102 62.7
Gorai.004G219800 Gossypium raimondii HOM05D001070 ORTHO05D005132 9.0e-22 109.4 277 34.3
Hund28588 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.5e-21 108.6 335 31.3
Hund29110 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.5e-21 108.6 335 31.3
Medtr6g042180 Medicago truncatula HOM05D001070 ORTHO05D005132 2.6e-21 107.8 89 57.3
Nitab4.5_0007104g0080 Nicotiana tabacum HOM05D001070 ORTHO05D005132 2.6e-21 107.8 149 47.0
Hund27629 Selenicereus undatus HOM05D001070 ORTHO05D005132 2.6e-21 107.8 354 31.1
Gorai.010G136000 Gossypium raimondii HOM05D001070 ORTHO05D005132 8.4e-20 102.8 245 37.6
Hund31094 Selenicereus undatus HOM05D001070 ORTHO05D005132 8.4e-20 102.8 105 52.4
Nitab4.5_0004137g0040 Nicotiana tabacum HOM05D001070 ORTHO05D010233 7.1e-19 99.8 78 59.0
Peaxi162Scf00030g02113 Petunia axillaris HOM05D001070 ORTHO05D005132 6.0e-18 96.7 184 39.7
Nitab4.5_0012234g0050 Nicotiana tabacum HOM05D001070 ORTHO05D005132 7.9e-18 96.3 72 61.1
Hund28853 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.1e-16 92.4 279 32.3
Solyc07g041680.2 Solanum lycopersicum HOM05D001070 ORTHO05D005132 9.7e-16 89.4 104 50.0
Gohir.A02G108504 Gossypium hirsutum HOM05D001070 ORTHO05D005132 4.8e-15 87.0 121 47.9
SEGI_27427 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 1.8e-14 85.1 216 33.8
SEGI_20187 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 4.1e-14 84.0 216 33.3
SEGI_30878 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 4.1e-14 84.0 216 33.3
SEGI_36485 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 4.1e-14 84.0 216 33.3
arahy.Tifrunner.gnm1.ann1.IUHB90 Arachis hypogaea HOM05D001070 ORTHO05D005132 5.3e-14 83.6 93 50.5
Glyma.18G155800 Glycine max HOM05D001070 ORTHO05D005132 6.9e-14 83.2 226 35.4
Hund29500 Selenicereus undatus HOM05D001070 ORTHO05D005132 9.0e-14 82.8 228 32.0
Nitab4.5_0006502g0050 Nicotiana tabacum HOM05D001070 ORTHO05D036944 1.2e-13 82.4 172 39.0
Gohir.D09G079833 Gossypium hirsutum HOM05D001070 ORTHO05D005132 2.0e-13 81.6 73 53.4
Medtr7g104140 Medicago truncatula HOM05D001070 ORTHO05D005132 2.0e-13 81.6 88 52.3
Medtr8g093760 Medicago truncatula HOM05D001070 ORTHO05D005132 2.0e-13 81.6 226 31.0
Solyc02g011820.3 Solanum lycopersicum HOM05D001070 ORTHO05D005132 2.0e-13 81.6 137 39.4
Hund28852 Selenicereus undatus HOM05D001070 ORTHO05D005132 3.4e-13 80.9 184 35.3
arahy.Tifrunner.gnm1.ann1.LH3NEH Arachis hypogaea HOM05D001070 ORTHO05D005132 5.9e-13 80.1 193 35.8
Gorai.006G079500 Gossypium raimondii HOM05D001070 ORTHO05D005132 5.9e-13 80.1 121 45.5
SEGI_38135 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 7.7e-13 79.7 117 41.9
SEGI_01987 Sequoiadendron giganteum HOM05D009451 ORTHO05D015743 6.5e-12 76.6 232 31.0
GSVIVG01005309001 Vitis vinifera HOM05D001070 ORTHO05D005132 5.5e-11 73.6 250 30.0
Nn3g17667 Nelumbo nucifera HOM05D000388 ORTHO05D000473 2.7e-10 71.2 203 34.0
Nitab4.5_0007400g0070 Nicotiana tabacum HOM05D001070 ORTHO05D036944 3.6e-10 70.9 159 38.4
Gorai.002G047700 Gossypium raimondii HOM05D001070 ORTHO05D005132 5.1e-09 67.0 143 38.5
Medtr1g051590 Medicago truncatula HOM05D000533 ORTHO05D001069 5.1e-09 67.0 141 36.2
MBI08_g37092_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D005132 2.0e-08 65.1 43 69.8
Nn029s41577 Nelumbo nucifera HOM05D001070 ORTHO05D005132 2.5e-08 64.7 32 81.2
Solyc10g047390.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.3e-07 62.4 77 46.8
Hund28589 Selenicereus undatus HOM05D001070 ORTHO05D005132 1.7e-07 62.0 52 53.8
Gohir.A13G086425 Gossypium hirsutum HOM05D001070 ORTHO05D005132 3.1e-06 57.8 120 35.0
Gorai.012G102100 Gossypium raimondii HOM05D001070 ORTHO05D005132 3.1e-06 57.8 129 34.9
SGA_v2.0_scaffold150G36658 Striga asiatica HOM05D000533 ORTHO05D010350 4.1e-06 57.4 122 36.1
Solyc11g021260.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 6.9e-06 56.6 102 36.3


User provided reference genes

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