Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0258011 Helianthus annuus HOM05D002939 ORTHO05D003391 1.1e-52 209.5 97 100.0
Lsat_1_v5_gn_3_39261 Lactuca sativa HOM05D002939 ORTHO05D003391 1.1e-15 86.7 58 65.5
Lsat_1_v5_gn_4_68920 Lactuca sativa HOM05D002939 ORTHO05D003391 3.5e-14 81.6 58 60.3
HanXRQChr10g0297091 Helianthus annuus HOM05D002939 ORTHO05D003391 6.0e-14 80.9 57 61.4
Rhsim04G0066000 Rhododendron simsii HOM05D002939 ORTHO05D003391 3.9e-13 78.2 64 60.9
HanXRQChr05g0140461 Helianthus annuus HOM05D002939 ORTHO05D003391 8.7e-13 77.0 57 56.1
Dinv23696 Davidia involucrata HOM05D002939 ORTHO05D003391 1.5e-12 76.3 58 60.3
vmacro09269 Vaccinium macrocarpon HOM05D002939 ORTHO05D003391 1.5e-12 76.3 59 59.3
BraA01t01895Z Brassica rapa HOM05D002939 ORTHO05D003391 1.9e-12 75.9 81 49.4
Lj8A116T74 Lonicera japonica HOM05D002939 ORTHO05D003391 2.5e-12 75.5 58 60.3
Sc06g0009200 Simmondsia chinensis HOM05D002939 ORTHO05D003391 2.5e-12 75.5 58 62.1
CSS0037606 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 4.3e-12 74.7 58 60.3
Oeu041295.1 Olea europaea HOM05D002939 ORTHO05D003391 4.3e-12 74.7 58 58.6
CSS0026767 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 5.7e-12 74.3 58 58.6
BolC1t02414H Brassica oleracea HOM05D002939 ORTHO05D003391 7.4e-12 73.9 69 50.7
Sed0018022 Sechium edule HOM05D002939 ORTHO05D003391 7.4e-12 73.9 58 58.6
Eucgr.K00939 Eucalyptus grandis HOM05D002939 ORTHO05D003391 9.7e-12 73.6 58 56.9
Manes.12G079700 Manihot esculenta HOM05D002939 ORTHO05D003391 9.7e-12 73.6 57 59.6
Nn1g06722 Nelumbo nucifera HOM05D002939 ORTHO05D003391 9.7e-12 73.6 81 48.1
Ciclev10016505m.g Citrus clementina HOM05D002939 ORTHO05D003391 1.6e-11 72.8 57 57.9
Duzib248G1539 Durio zibethinus HOM05D002939 ORTHO05D003391 1.6e-11 72.8 57 57.9
Manes.13G150600 Manihot esculenta HOM05D002939 ORTHO05D003391 1.6e-11 72.8 57 57.9
DCAR_021229 Daucus carota HOM05D002939 ORTHO05D003391 2.2e-11 72.4 57 57.9
Dinv15472 Davidia involucrata HOM05D002939 ORTHO05D003391 2.2e-11 72.4 57 57.9
ECA234G1210 Erigeron canadensis HOM05D002939 ORTHO05D003391 2.2e-11 72.4 59 54.2
Peaxi162Scf00007g02859 Petunia axillaris HOM05D002939 ORTHO05D003391 2.2e-11 72.4 58 56.9
Thecc.02G173400 Theobroma cacao HOM05D002939 ORTHO05D003391 2.2e-11 72.4 57 57.9
GSVIVG01030570001 Vitis vinifera HOM05D002939 ORTHO05D003391 2.2e-11 72.4 58 56.9
PSO541G3829 Papaver somniferum HOM05D002939 ORTHO05D003391 2.8e-11 72.0 58 55.2
PSO675G2902 Papaver somniferum HOM05D002939 ORTHO05D003391 2.8e-11 72.0 58 55.2
Atru.chr6.3050 Acer truncatum HOM05D002939 ORTHO05D003391 4.8e-11 71.2 57 56.1
Lj3g0016336 Lotus japonicus HOM05D002939 ORTHO05D003391 4.8e-11 71.2 58 53.4
CANSAT64G1668 Cannabis sativa HOM05D002939 ORTHO05D003391 6.3e-11 70.9 58 55.2
PGR142G4146 Punica granatum HOM05D002939 ORTHO05D003391 6.3e-11 70.9 57 56.1
COL.COLO4_13700 Corchorus olitorius HOM05D002939 ORTHO05D003391 8.2e-11 70.5 57 54.4
FvH4_6g44900 Fragaria vesca HOM05D002939 ORTHO05D003391 8.2e-11 70.5 58 56.9
FAN02G0547 Fragaria x ananassa HOM05D002939 ORTHO05D003391 8.2e-11 70.5 58 56.9
FAN05G5001 Fragaria x ananassa HOM05D002939 ORTHO05D003391 8.2e-11 70.5 58 56.9
FAN09G4592 Fragaria x ananassa HOM05D002939 ORTHO05D003391 8.2e-11 70.5 58 56.9
FAN14G1254 Fragaria x ananassa HOM05D002939 ORTHO05D003391 8.2e-11 70.5 58 56.9
Lalb_Chr03g0029231 Lupinus albus HOM05D002939 ORTHO05D003391 8.2e-11 70.5 57 59.6
Potri.019G104500 Populus trichocarpa HOM05D002939 ORTHO05D003391 8.2e-11 70.5 57 56.1
Sabra19G0114900 Salix brachista HOM05D002939 ORTHO05D003391 8.2e-11 70.5 57 56.1
DCAR_009734 Daucus carota HOM05D002939 ORTHO05D003391 1.1e-10 70.1 57 52.6
Duzib052G0602 Durio zibethinus HOM05D002939 ORTHO05D003391 1.1e-10 70.1 57 54.4
Psat7g199800 Pisum sativum HOM05D002939 ORTHO05D003391 1.1e-10 70.1 58 56.9
CiPaw.03G170900 Carya illinoinensis HOM05D002939 ORTHO05D003391 1.4e-10 69.7 58 56.9
MD17G1082000 Malus domestica HOM05D002939 ORTHO05D003391 1.4e-10 69.7 58 53.4
Potri.013G145400 Populus trichocarpa HOM05D002939 ORTHO05D003391 1.4e-10 69.7 57 56.1
Haze_13102 Corylus avellana HOM05D002939 ORTHO05D003391 1.8e-10 69.3 58 55.2
TWI75G1131 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 1.8e-10 69.3 57 56.1
Aqoxy1G02703 Aquilegia oxysepala HOM05D002939 ORTHO05D003391 2.4e-10 68.9 58 53.4
Ca_20689_v3 Cicer arietinum L. HOM05D002939 ORTHO05D003391 2.4e-10 68.9 58 55.2
Duzib132G0253 Durio zibethinus HOM05D002939 ORTHO05D003391 2.4e-10 68.9 57 54.4
Thhalv10026038m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 2.4e-10 68.9 62 50.0
Lj1A734T67 Lonicera japonica HOM05D002939 ORTHO05D003391 2.4e-10 68.9 58 55.2
TAR626G0871 Trochodendron aralioides HOM05D002939 ORTHO05D003391 2.4e-10 68.9 58 53.4
Cpa.g.sc34.111 Carica papaya HOM05D002939 ORTHO05D003391 3.1e-10 68.6 57 56.1
Nitab4.5_0007732g0030 Nicotiana tabacum HOM05D002939 ORTHO05D003391 3.1e-10 68.6 57 56.1
Hund08038 Selenicereus undatus HOM05D002939 ORTHO05D003391 3.1e-10 68.6 57 56.1
CiPaw.04G123300 Carya illinoinensis HOM05D002939 ORTHO05D003391 4.1e-10 68.2 58 53.4
Cc00_g21110 Coffea canephora HOM05D002939 ORTHO05D003391 4.1e-10 68.2 67 49.3
MD09G1092100 Malus domestica HOM05D002939 ORTHO05D003391 4.1e-10 68.2 58 51.7
THA.LOC104814495 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 4.1e-10 68.2 57 52.6
Actinidia39301 Actinidia chinensis HOM05D002939 ORTHO05D003391 6.9e-10 67.4 57 54.4
BcaC09g50506 Brassica carinata HOM05D002939 ORTHO05D003391 6.9e-10 67.4 57 50.9
BcaNung01589 Brassica carinata HOM05D002939 ORTHO05D003391 6.9e-10 67.4 57 50.9
A01p19610 Brassica napus HOM05D002939 ORTHO05D003391 6.9e-10 67.4 57 50.9
C01p24640 Brassica napus HOM05D002939 ORTHO05D003391 6.9e-10 67.4 57 50.9
CARHR235900 Cardamine hirsuta HOM05D002939 ORTHO05D003391 6.9e-10 67.4 57 50.9
Glyma.06G297100 Glycine max HOM05D002939 ORTHO05D003391 6.9e-10 67.4 58 55.2
Nitab4.5_0003018g0050 Nicotiana tabacum HOM05D002939 ORTHO05D003391 6.9e-10 67.4 58 51.7
Nitab4.5_0009520g0010 Nicotiana tabacum HOM05D002939 ORTHO05D003391 6.9e-10 67.4 58 51.7
QL10p048471 Quercus lobata HOM05D002939 ORTHO05D003391 6.9e-10 67.4 58 55.2
Sp7g26140 Schrenkiella parvula HOM05D002939 ORTHO05D003391 6.9e-10 67.4 57 50.9
Zm00001eb151460 Zea mays HOM05D002939 ORTHO05D003391 6.9e-10 67.4 58 50.0
ClCG02G001270 Citrullus lanatus HOM05D002939 ORTHO05D003391 9.0e-10 67.0 57 50.9
MELO3C018761.2 Cucumis melo HOM05D002939 ORTHO05D003391 9.0e-10 67.0 57 50.9
CsaV3_7G004160 Cucumis sativus L. HOM05D002939 ORTHO05D003391 9.0e-10 67.0 57 50.9
Gohir.D12G141000 Gossypium hirsutum HOM05D002939 ORTHO05D003391 9.0e-10 67.0 57 52.6
Gorai.008G152400 Gossypium raimondii HOM05D002939 ORTHO05D003391 9.0e-10 67.0 57 52.6
Prupe.3G232900 Prunus persica HOM05D002939 ORTHO05D003391 9.0e-10 67.0 58 50.0
RcHm_v2.0_Chr2g0162081 Rosa chinensis HOM05D002939 ORTHO05D003391 9.0e-10 67.0 58 53.4
THA.LOC104804063 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 9.0e-10 67.0 57 50.9
TWI18G0096 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 9.0e-10 67.0 57 54.4
Actinidia30483 Actinidia chinensis HOM05D002939 ORTHO05D003391 1.2e-09 66.6 57 54.4
BolC7t46079H Brassica oleracea HOM05D002939 ORTHO05D003391 1.2e-09 66.6 62 48.4
PSO210G1245 Papaver somniferum HOM05D002939 ORTHO05D003391 1.2e-09 66.6 58 55.2
AL7G24410 Arabidopsis lyrata HOM05D002939 ORTHO05D003391 1.5e-09 66.2 57 50.9
Gohir.A12G137100 Gossypium hirsutum HOM05D002939 ORTHO05D003391 1.5e-09 66.2 57 52.6
Os01g0780800 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 1.5e-09 66.2 58 50.0
Os05g0502700 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 1.5e-09 66.2 57 49.1
Aqoxy4G01374 Aquilegia oxysepala HOM05D002939 ORTHO05D003391 2.0e-09 65.9 58 48.3
Lj3g0000198 Lotus japonicus HOM05D002939 ORTHO05D003391 2.0e-09 65.9 57 54.4
Lalb_Chr01g0005401 Lupinus albus HOM05D002939 ORTHO05D003391 2.0e-09 65.9 57 54.4
Carub.0007s1257 Capsella rubella HOM05D002939 ORTHO05D003391 2.6e-09 65.5 57 49.1
Zm00001eb369850 Zea mays HOM05D002939 ORTHO05D003391 2.6e-09 65.5 58 50.0
AT4G28190 Arabidopsis thaliana HOM05D002939 ORTHO05D003391 3.4e-09 65.1 57 49.1
CAN.G996.6 Capsicum annuum HOM05D002939 ORTHO05D003391 3.4e-09 65.1 57 50.9
PSO832G1320 Papaver somniferum HOM05D002939 ORTHO05D003391 3.4e-09 65.1 58 55.2
TAR597G0004 Trochodendron aralioides HOM05D002939 ORTHO05D003391 3.4e-09 65.1 58 51.7
A03p57900 Brassica napus HOM05D002939 ORTHO05D003391 4.5e-09 64.7 57 47.4
BraA03t14854Z Brassica rapa HOM05D002939 ORTHO05D003391 4.5e-09 64.7 57 47.4
Gohir.A03G159200 Gossypium hirsutum HOM05D002939 ORTHO05D003391 4.5e-09 64.7 57 50.9
Gohir.D02G182400 Gossypium hirsutum HOM05D002939 ORTHO05D003391 4.5e-09 64.7 57 50.9
Gorai.005G204800 Gossypium raimondii HOM05D002939 ORTHO05D003391 4.5e-09 64.7 57 50.9
SHI10467 Sapria himalayana HOM05D002939 ORTHO05D003391 4.5e-09 64.7 57 50.9
Psat5g270120 Pisum sativum HOM05D002939 ORTHO05D003391 5.9e-09 64.3 58 50.0
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 7.6e-09 63.9 31 83.9
Medtr0072s0040 Medicago truncatula HOM05D002939 ORTHO05D003391 7.6e-09 63.9 57 52.6
HanXRQChr17g0542471 Helianthus annuus HOM05D002939 ORTHO05D003391 1.0e-08 63.5 42 64.3
Peaxi162Scf00485g00037 Petunia axillaris HOM05D002939 ORTHO05D003391 1.0e-08 63.5 57 52.6
arahy.Tifrunner.gnm1.ann1.A9FWXT Arachis hypogaea HOM05D002939 ORTHO05D003391 1.3e-08 63.2 57 47.4
arahy.Tifrunner.gnm1.ann1.SAD4HJ Arachis hypogaea HOM05D002939 ORTHO05D003391 1.7e-08 62.8 57 47.4
Solyc07g054450.4 Solanum lycopersicum HOM05D002939 ORTHO05D003391 1.7e-08 62.8 57 49.1
Sopen07g028390 Solanum pennellii HOM05D002939 ORTHO05D003391 1.7e-08 62.8 57 49.1
TPR.G27079 Trifolium pratense HOM05D002939 ORTHO05D003391 1.7e-08 62.8 58 46.6
Aa31LG2G22060 Aethionema arabicum HOM05D002939 ORTHO05D003391 2.2e-08 62.4 57 47.4
BcaC06g32639 Brassica carinata HOM05D002939 ORTHO05D003391 2.2e-08 62.4 57 45.6
C07p56020 Brassica napus HOM05D002939 ORTHO05D003391 2.2e-08 62.4 57 45.6
MBI02_g10552_MAGBIO Magnolia biondii HOM05D002939 ORTHO05D003391 2.2e-08 62.4 58 48.3
PGSC0003DMG400018322 Solanum tuberosum HOM05D002939 ORTHO05D003391 2.2e-08 62.4 57 47.4
BcaB03g16872 Brassica carinata HOM05D002939 ORTHO05D003391 2.9e-08 62.0 77 41.6
BcaC06g36772 Brassica carinata HOM05D002939 ORTHO05D003391 2.9e-08 62.0 57 47.4
C07p00100 Brassica napus HOM05D002939 ORTHO05D003391 2.9e-08 62.0 57 47.4
BolC7t40461H Brassica oleracea HOM05D002939 ORTHO05D003391 2.9e-08 62.0 57 47.4
Sed0025006 Sechium edule HOM05D002939 ORTHO05D003391 2.9e-08 62.0 57 47.4
ECA246G5124 Erigeron canadensis HOM05D000186 ORTHO05D002091 5.0e-08 61.2 47 57.4
HPP92_001810 Vanilla planifolia HOM05D002939 ORTHO05D003391 6.5e-08 60.8 57 45.6
Sp3g34060 Schrenkiella parvula HOM05D002939 ORTHO05D003391 8.5e-08 60.5 57 43.9
BraA07t27786Z Brassica rapa HOM05D002939 ORTHO05D003391 1.1e-07 60.1 57 43.9
CARHR111530 Cardamine hirsuta HOM05D002939 ORTHO05D003391 1.4e-07 59.7 57 42.1
Glyma.12G108000 Glycine max HOM05D002939 ORTHO05D003391 1.4e-07 59.7 58 50.0
TPR.G21653 Trifolium pratense HOM05D002939 ORTHO05D003391 1.4e-07 59.7 58 48.3
ATR0693G042 Amborella trichopoda HOM05D002939 ORTHO05D003391 1.9e-07 59.3 58 43.1
AT2G20825 Arabidopsis thaliana HOM05D002939 ORTHO05D003391 1.9e-07 59.3 76 36.8
Phvul.011G112300 Phaseolus vulgaris HOM05D002939 ORTHO05D003391 1.9e-07 59.3 58 50.0
VMungo1127G1304 Vigna mungo HOM05D002939 ORTHO05D003391 1.9e-07 59.3 58 50.0
CDE12G0250 Ceratophyllum demersum HOM05D002939 ORTHO05D003391 3.2e-07 58.5 57 40.4
Medtr2g090080 Medicago truncatula HOM05D002939 ORTHO05D003391 4.2e-07 58.2 58 46.6
CDE01G0782 Ceratophyllum demersum HOM05D002939 ORTHO05D003391 5.5e-07 57.8 57 40.4
AL3G53990 Arabidopsis lyrata HOM05D002939 ORTHO05D003391 7.2e-07 57.4 57 38.6
Ah.06g183610 Amaranthus hybridus HOM05D000101 ORTHO05D000089 9.3e-07 57.0 59 39.0
Carub.0003s3545 Capsella rubella HOM05D002939 ORTHO05D003391 9.3e-07 57.0 58 41.4
Thhalv10002089m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 9.3e-07 57.0 57 42.1
Aa31LG8G17660 Aethionema arabicum HOM05D002939 ORTHO05D003391 1.2e-06 56.6 57 43.9
Gohir.D05G361500 Gossypium hirsutum HOM05D002939 ORTHO05D003391 1.2e-06 56.6 58 43.1
Gorai.009G431300 Gossypium raimondii HOM05D002939 ORTHO05D003391 1.2e-06 56.6 58 43.1
Duzib268G1116 Durio zibethinus HOM05D002939 ORTHO05D003391 2.7e-06 55.5 59 44.1
Gohir.A04G026700 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.7e-06 55.5 58 43.1
Gohir.A04G026800 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.7e-06 55.5 58 43.1
Lalb_Chr22g0356401 Lupinus albus HOM05D002939 ORTHO05D003391 6.1e-06 54.3 58 43.1


User provided reference genes

Program Settings