Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 2.0e-297 1025.0 508 100.0
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 6.7e-181 637.9 516 64.9
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 3.4e-156 555.8 521 53.7
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 2.2e-139 500.0 514 50.2
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 1.5e-135 487.3 515 49.5
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 4.6e-129 465.7 530 47.4
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 2.5e-127 459.9 513 47.6
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 3.3e-127 459.5 406 60.6
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 5.6e-127 458.8 513 47.6
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 1.6e-126 457.2 524 47.1
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 1.5e-124 450.7 513 48.5
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 3.4e-124 449.5 518 45.6
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 2.2e-123 446.8 504 46.8
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 3.7e-123 446.0 518 45.2
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 2.4e-122 443.4 525 45.3
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 6.0e-121 438.7 523 44.2
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 6.0e-121 438.7 523 46.3
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 1.9e-119 433.7 518 45.0
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 7.3e-119 431.8 526 45.1
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 1.1e-117 427.9 546 45.6
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 4.4e-116 422.5 523 44.2
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 1.7e-115 420.6 521 44.0
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.8e-115 419.5 483 45.8
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 1.1e-114 417.9 520 44.2
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 1.9e-114 417.2 519 45.7
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 4.2e-114 416.0 511 43.4
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 1.2e-113 414.5 531 44.3
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 2.7e-113 413.3 524 45.0
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 2.7e-113 413.3 526 44.7
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 4.6e-113 412.5 523 45.1
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 6.0e-113 412.1 522 44.8
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 7.8e-113 411.8 519 44.1
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 1.0e-112 411.4 515 44.3
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 1.1e-111 407.9 521 44.1
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 1.5e-111 407.5 518 44.0
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 2.1e-110 403.7 521 44.9
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 2.8e-110 403.3 524 44.1
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.6e-110 402.9 476 45.2
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 4.8e-110 402.5 522 44.3
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 1.1e-109 401.4 521 44.5
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 2.4e-109 400.2 466 46.6
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 5.3e-109 399.1 517 43.3
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 5.3e-109 399.1 521 44.3
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 6.9e-109 398.7 659 38.1
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 1.5e-108 397.5 524 45.0
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 1.5e-108 397.5 520 43.1
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 2.2e-107 393.7 494 43.9
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 3.0e-104 383.3 515 42.9
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 6.6e-104 382.1 502 41.2
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 2.1e-102 377.1 523 41.5
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 4.8e-102 375.9 523 42.3
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 2.4e-101 373.6 515 43.5
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 9.0e-101 371.7 462 46.3
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 2.0e-100 370.5 508 43.5
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 2.2e-99 367.1 512 39.8
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 3.8e-99 366.3 421 45.1
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 1.9e-98 364.0 366 53.3
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 1.6e-97 360.9 516 41.7
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 2.7e-97 360.1 529 42.3
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 3.5e-97 359.8 519 42.6
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 4.6e-97 359.4 518 39.8
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.3e-96 357.8 473 42.9
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 3.0e-96 356.7 529 42.3
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 3.0e-96 356.7 527 42.3
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 3.9e-96 356.3 526 39.5
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 5.1e-96 355.9 535 42.4
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 1.5e-95 354.4 528 42.0
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 4.3e-95 352.8 681 35.4
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 1.3e-94 351.3 517 41.4
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 2.8e-94 350.1 526 42.0
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 3.7e-94 349.7 522 38.9
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 1.4e-93 347.8 544 40.1
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 1.5e-92 344.4 462 40.5
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 2.0e-92 344.0 451 44.8
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 1.7e-91 340.9 520 40.8
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 3.8e-91 339.7 378 48.7
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 8.7e-88 328.6 376 46.8
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 5.7e-87 325.9 518 36.7
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 7.4e-87 325.5 451 43.5
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 4.8e-86 322.8 501 36.9
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 4.0e-85 319.7 507 38.9
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 7.6e-84 315.5 531 35.4
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 8.4e-83 312.0 411 41.8
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 4.3e-79 299.7 890 28.0
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 3.2e-74 283.5 406 40.4
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 3.9e-72 276.6 458 37.6
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 1.7e-70 271.2 295 52.2
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 4.4e-63 246.5 550 31.3
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 4.1e-61 240.0 325 43.7
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 8.5e-59 232.3 276 47.8
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 3.7e-54 216.9 267 44.2
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 1.9e-50 204.5 315 37.1
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 2.5e-50 204.1 511 29.0
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 3.4e-47 193.7 454 30.8
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 3.7e-46 190.3 333 36.0
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 2.7e-41 174.1 331 35.3
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 4.9e-38 163.3 283 35.0
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.1e-37 162.2 146 56.2
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 1.1e-34 152.1 164 48.2
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 2.8e-33 147.5 282 33.7
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 1.0e-32 145.6 134 53.0
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 6.8e-32 142.9 250 37.2
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 2.9e-30 137.5 116 57.8
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 4.1e-29 133.7 102 56.9
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 5.4e-29 133.3 577 23.2
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 1.9e-26 124.8 141 47.5
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 5.6e-26 123.2 280 30.7
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 9.5e-26 122.5 201 37.8
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 2.1e-25 121.3 475 24.8
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 5.2e-24 116.7 175 38.3
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 2.3e-19 101.3 134 44.0
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 5.0e-19 100.1 135 39.3
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 9.8e-15 85.9 259 30.5
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 3.5e-12 77.4 136 39.0
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 5.1e-11 73.6 123 41.5
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 9.5e-10 69.3 66 51.5
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 1.8e-08 65.1 141 35.5
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 1.8e-08 65.1 141 35.5
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 3.1e-08 64.3 90 43.3
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 1.5e-07 62.0 114 36.8
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 1.5e-07 62.0 114 36.8
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 1.5e-07 62.0 114 36.8
BcaB01g04934 Brassica carinata HOM05D005725 ORTHO05D093362 8.4e-06 56.2 67 44.8
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 8.4e-06 56.2 131 29.0


User provided reference genes

Program Settings