Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 2.1e-186 655.6 345 100.0
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.2e-144 516.9 366 76.0
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 5.9e-128 461.5 359 71.6
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 3.7e-122 442.2 371 66.0
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.4e-121 439.5 372 70.4
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.0e-120 436.4 374 69.0
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 4.5e-120 435.3 366 66.4
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 1.7e-119 433.3 370 66.5
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 2.2e-119 433.0 359 66.3
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.8e-119 432.2 359 66.0
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 3.8e-119 432.2 371 68.2
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 6.5e-119 431.4 359 66.0
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.1e-118 430.6 359 65.7
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.9e-118 429.9 371 68.5
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.9e-118 429.9 370 66.5
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 2.5e-118 429.5 414 61.4
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.1e-117 426.4 367 65.7
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 2.1e-117 426.4 369 64.8
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.7e-117 426.0 377 67.6
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 2.7e-117 426.0 375 66.4
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 2.7e-117 426.0 366 66.7
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 4.6e-117 425.2 374 65.0
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.0e-116 424.1 365 66.0
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.8e-116 423.3 393 64.6
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 2.3e-116 422.9 375 64.5
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.1e-115 420.6 376 64.9
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-115 420.6 373 63.3
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 3.1e-113 412.5 377 63.7
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 5.3e-113 411.8 355 63.7
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 6.9e-113 411.4 377 65.5
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.0e-112 409.8 376 63.6
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.0e-112 409.8 388 62.6
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 7.7e-112 407.9 376 63.8
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.3e-111 407.1 376 62.5
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.3e-111 407.1 378 62.4
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.7e-111 406.8 368 64.9
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 3.8e-111 405.6 382 61.5
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 8.5e-111 404.4 380 63.7
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.1e-110 404.1 389 60.9
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 7.2e-110 401.4 389 61.4
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.2e-109 400.6 379 60.4
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 4.7e-109 398.7 362 62.4
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 4.7e-109 398.7 382 62.8
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 6.1e-109 398.3 377 64.2
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 6.1e-109 398.3 345 65.2
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.0e-108 397.5 337 64.4
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.4e-108 397.1 345 65.2
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 1.4e-108 397.1 418 58.1
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 8.8e-108 394.4 427 57.8
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.5e-107 393.7 360 62.2
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 1.5e-107 393.7 347 66.6
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 2.0e-107 393.3 369 64.8
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 3.7e-106 389.0 349 66.2
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 4.8e-106 388.7 382 60.5
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 4.8e-106 388.7 343 64.4
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 6.3e-106 388.3 355 62.3
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 6.3e-106 388.3 349 64.2
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.1e-105 387.5 348 62.9
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.1e-105 387.5 377 59.4
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 1.1e-105 387.5 372 63.7
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.4e-105 387.1 390 59.2
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.4e-105 387.1 376 61.2
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 2.4e-105 386.3 379 61.7
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 3.1e-105 386.0 350 64.9
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 7.0e-105 384.8 369 64.2
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.6e-104 383.6 355 62.8
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.7e-104 381.3 367 62.7
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 2.2e-103 379.8 376 59.3
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 5.0e-103 378.6 372 61.0
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 5.0e-103 378.6 368 61.4
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 6.5e-103 378.3 353 61.2
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.5e-102 377.1 369 59.6
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.9e-102 376.7 427 56.9
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 3.2e-102 375.9 353 60.9
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 3.2e-102 375.9 354 63.6
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.2e-102 375.6 356 62.9
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 4.2e-102 375.6 372 60.8
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 4.2e-102 375.6 441 52.6
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 2.7e-101 372.9 374 59.9
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 4.7e-101 372.1 374 61.2
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 8.0e-101 371.3 355 62.3
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 6.7e-100 368.2 351 60.7
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 3.3e-99 365.9 358 59.8
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 3.3e-99 365.9 367 61.3
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 4.4e-99 365.5 373 61.9
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 3.7e-98 362.5 367 58.6
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 3.5e-96 355.9 369 59.9
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 3.8e-95 352.4 355 60.0
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.9e-94 350.1 373 57.1
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 5.5e-94 348.6 350 61.7
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 9.4e-94 347.8 375 58.1
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.2e-93 347.4 353 58.4
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 2.1e-93 346.7 371 55.5
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 2.7e-93 346.3 353 56.9
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 4.7e-93 345.5 358 57.0
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.8e-92 343.6 348 58.3
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 4.4e-91 339.0 384 58.6
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 5.7e-91 338.6 374 59.1
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 1.3e-90 337.4 363 58.7
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.1e-89 334.3 367 53.7
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 1.8e-89 333.6 368 59.5
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 1.8e-89 333.6 368 59.5
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 7.0e-89 331.6 362 57.2
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.2e-88 330.9 412 53.2
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 3.5e-88 329.3 343 56.0
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 7.7e-88 328.2 343 56.6
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.7e-87 327.0 356 56.2
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 1.1e-86 324.3 362 56.4
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.2e-85 320.9 356 54.5
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.6e-85 320.5 353 57.8
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 6.1e-85 318.5 375 54.1
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 8.8e-84 314.7 350 53.7
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 3.4e-83 312.8 351 56.4
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.1e-81 307.8 339 55.2
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 3.1e-81 306.2 472 48.1
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 9.2e-81 304.7 342 57.6
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 7.8e-80 301.6 503 43.7
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.8e-79 299.3 408 47.8
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.5e-78 296.6 323 57.3
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 2.0e-75 287.0 398 48.7
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 2.2e-74 283.5 308 58.4
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 8.3e-74 281.6 316 57.9
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 3.2e-73 279.6 341 53.1
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 5.4e-73 278.9 403 47.4
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 3.0e-71 273.1 255 62.7
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 3.6e-69 266.2 285 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 1.2e-67 261.2 406 43.3
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 4.9e-66 255.8 194 68.6
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.1e-62 244.6 358 47.8
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.1e-57 228.0 162 70.4
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.1e-55 219.2 300 54.7
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.1e-55 219.2 300 54.7
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 4.3e-54 216.1 250 52.4
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 2.4e-49 200.3 200 57.5
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 3.2e-49 199.9 98 93.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.9e-47 193.0 99 90.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 3.9e-47 193.0 99 90.9
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 1.1e-46 191.4 272 50.0
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 7.6e-43 178.7 305 43.6
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 9.9e-43 178.3 229 47.2
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 2.1e-40 170.6 93 88.2
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 5.1e-39 166.0 185 56.8
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 7.3e-38 162.2 686 27.3
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 4.5e-35 152.9 218 49.5
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 9.3e-33 145.2 220 47.7
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.2e-32 144.8 178 55.1
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.6e-32 144.4 87 82.8
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.3e-29 134.8 341 34.6
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 2.6e-27 127.1 70 82.9
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.5e-27 126.3 84 76.2
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.8e-23 114.4 94 56.4
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 2.5e-22 110.5 98 52.0
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 4.3e-22 109.8 65 80.0
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.4e-20 104.8 317 34.7
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 3.8e-18 96.7 183 45.4
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 1.8e-15 87.8 71 63.4
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 6.1e-08 62.8 74 48.6


User provided reference genes

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