Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 0.0e+00 1244.6 716 100.0
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 7.9e-244 847.4 702 74.1
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 8.2e-209 731.1 739 63.6
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 2.9e-177 626.3 746 57.2
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 3.5e-167 592.8 751 53.4
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.6e-164 582.8 696 52.3
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 5.2e-163 578.9 740 55.5
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 4.1e-160 569.3 737 52.9
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 4.1e-160 569.3 737 52.9
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 5.4e-160 568.9 753 53.8
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 7.1e-160 568.5 733 51.7
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 5.1e-158 562.4 719 53.5
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.9e-157 560.5 730 53.6
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 4.3e-157 559.3 691 53.7
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 4.7e-156 555.8 734 52.6
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.1e-155 554.7 711 50.1
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.1e-155 554.7 745 54.2
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.1e-155 554.7 744 53.2
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 1.5e-154 550.8 733 53.9
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 5.8e-154 548.9 731 52.8
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 5.8e-154 548.9 747 54.6
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 2.2e-153 547.0 745 51.5
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 6.4e-153 545.4 727 49.8
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 1.2e-151 541.2 747 52.3
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 6.0e-151 538.9 746 51.7
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 7.8e-151 538.5 745 54.4
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.5e-149 534.3 749 53.7
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.3e-149 533.1 744 52.7
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 4.7e-148 529.3 747 53.0
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 4.7e-148 529.3 741 52.1
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 4.7e-148 529.3 707 55.4
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.4e-147 527.7 718 51.0
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 3.1e-147 526.6 708 54.2
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 7.6e-146 521.9 735 50.3
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.7e-145 520.8 740 52.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 4.9e-145 519.2 557 57.1
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 5.4e-144 515.8 719 50.5
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 6.0e-143 512.3 734 51.8
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 6.0e-143 512.3 743 49.9
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.5e-141 507.7 679 53.0
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.9e-141 507.3 730 50.5
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.9e-141 507.3 735 51.3
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 5.6e-141 505.8 753 49.7
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 5.6e-141 505.8 686 56.0
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.3e-140 504.6 750 52.3
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 6.2e-140 502.3 663 53.2
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 4.0e-139 499.6 743 50.5
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 1.5e-138 497.7 702 49.7
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.5e-138 497.7 738 48.0
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 7.6e-138 495.4 670 55.2
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.9e-137 493.4 737 48.7
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.4e-136 491.1 725 51.0
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 7.9e-135 485.3 543 56.5
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 3.0e-134 483.4 754 51.9
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 5.1e-134 482.6 708 51.8
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 1.8e-131 474.2 713 48.5
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 2.6e-130 470.3 574 54.9
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 3.4e-130 469.9 752 48.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.8e-130 469.2 722 49.2
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 3.8e-129 466.5 756 47.5
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 1.1e-128 464.9 704 48.2
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.1e-128 464.9 707 48.7
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 4.6e-127 459.5 680 50.1
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 6.0e-127 459.1 727 47.5
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 7.9e-127 458.8 705 48.8
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 2.3e-126 457.2 724 47.9
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 3.0e-126 456.8 667 49.9
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.1e-126 456.1 709 49.8
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 5.1e-126 456.1 701 50.6
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.9e-125 454.1 710 50.0
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 7.4e-125 452.2 770 47.0
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 2.8e-124 450.3 734 49.5
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 6.2e-124 449.1 710 49.9
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 2.0e-122 444.1 743 45.8
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.3e-121 441.4 759 46.2
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.1e-120 438.3 530 54.7
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 1.9e-120 437.6 732 48.5
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 4.2e-120 436.4 767 47.6
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.5e-117 427.9 719 47.4
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.3e-115 419.5 517 52.6
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 3.4e-114 416.8 705 47.5
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 1.6e-111 407.9 716 45.5
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 4.6e-111 406.4 714 47.9
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 1.8e-110 404.4 738 44.6
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 2.3e-110 404.1 310 69.0
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 2.5e-109 400.6 549 50.3
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 2.5e-109 400.6 740 44.3
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 3.7e-108 396.7 697 46.2
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 4.2e-104 383.3 528 51.3
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.7e-103 380.6 677 44.6
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 5.7e-101 372.9 676 45.1
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.5e-98 363.2 424 59.2
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 2.2e-97 360.9 685 43.9
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 8.5e-97 359.0 534 49.1
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.4e-94 351.7 685 41.0
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 2.6e-93 347.4 727 42.8
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 6.3e-92 342.8 645 41.4
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 2.6e-90 337.4 709 42.9
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 3.2e-88 330.5 720 39.6
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 5.5e-88 329.7 706 41.2
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.2e-84 315.8 736 36.1
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 6.1e-79 299.7 636 37.6
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.4e-78 298.5 434 48.2
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.8e-75 288.1 613 36.4
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 3.5e-74 283.9 380 55.8
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.8e-70 271.6 862 31.2
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 4.0e-70 270.4 839 33.0
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.2e-68 264.6 328 56.4
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.1e-67 262.3 480 42.1
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.5e-66 257.3 735 30.7
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 3.0e-62 244.2 267 52.1
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.9e-57 227.3 202 58.4
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 2.2e-52 211.5 693 32.0
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.6e-47 195.3 312 46.8
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 8.1e-47 193.0 205 52.7
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 3.1e-46 191.0 289 50.2
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 1.2e-45 189.1 226 52.2
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.7e-42 177.9 540 31.7
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 5.1e-41 173.7 578 31.0
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.2e-39 169.1 262 54.6
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 3.1e-38 164.5 453 31.6
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 2.9e-36 157.9 227 44.1
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 4.9e-36 157.1 261 50.2
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.3e-33 149.1 466 32.0
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.3e-32 144.4 268 43.3
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 1.6e-26 125.6 270 43.3
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 3.9e-25 120.9 119 53.8
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 8.1e-23 113.2 117 54.7
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.1e-22 112.8 140 52.1
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 9.0e-22 109.8 202 41.6
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.0e-21 108.6 91 63.7
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 2.9e-20 104.8 157 44.6
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.8e-17 95.5 108 49.1
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 2.5e-16 91.7 196 36.2
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 5.6e-16 90.5 77 58.4
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 4.8e-15 87.4 230 30.0
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 6.2e-15 87.0 77 57.1
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.3e-14 84.0 75 58.7
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 9.9e-13 79.7 180 38.3
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.4e-12 76.6 315 30.5
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 5.5e-11 73.9 67 59.7
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 7.9e-10 70.1 105 49.5
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 3.7e-07 61.2 54 61.1
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 6.2e-07 60.5 113 38.9
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 6.2e-07 60.5 78 39.7
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 6.2e-07 60.5 78 39.7
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 8.2e-07 60.1 50 50.0
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 1.1e-06 59.7 78 39.7
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 1.8e-06 58.9 64 50.0


User provided reference genes

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