Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 4.3e-59 231.1 114 100.0
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.5e-35 152.9 112 67.9
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 6.8e-33 144.1 105 71.4
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 3.2e-30 135.2 106 64.2
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.3e-27 124.0 109 57.8
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.1e-26 122.5 113 60.2
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.8e-25 119.4 110 56.4
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 5.2e-25 117.9 121 52.1
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.0e-24 115.9 110 58.2
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.3e-23 113.2 113 54.9
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.2e-23 112.5 114 56.1
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.9e-23 112.1 106 52.8
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 6.4e-23 110.9 114 49.1
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 6.4e-23 110.9 113 53.1
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 8.4e-23 110.5 119 53.8
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.4e-22 109.0 112 50.0
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.4e-22 109.0 116 49.1
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.4e-22 109.0 114 50.9
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.2e-22 108.6 113 51.3
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 9.3e-22 107.1 115 50.4
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 9.3e-22 107.1 115 50.4
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.2e-21 106.7 118 48.3
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.2e-21 106.7 116 50.9
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.6e-21 106.3 118 53.4
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.5e-21 105.1 116 48.3
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 4.6e-21 104.8 114 49.1
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 7.8e-21 104.0 117 48.7
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 7.8e-21 104.0 111 50.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.0e-20 103.6 111 55.0
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.3e-20 103.2 113 50.4
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.3e-20 103.2 111 51.4
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.3e-20 103.2 118 52.5
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.7e-20 102.8 109 49.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.0e-20 102.1 119 50.4
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.9e-20 101.7 86 61.6
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.6e-20 100.9 117 52.1
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 8.7e-20 100.5 118 47.5
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-19 100.1 108 50.9
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.5e-19 99.8 118 47.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.5e-19 99.8 118 54.2
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.9e-19 99.4 122 47.5
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.5e-19 99.0 117 49.6
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.5e-19 99.0 120 50.0
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.5e-19 99.0 111 49.5
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.3e-19 98.6 110 50.0
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.3e-19 98.6 124 49.2
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 3.3e-19 98.6 113 52.2
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.3e-19 98.6 119 45.4
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 5.6e-19 97.8 86 58.1
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-19 97.4 118 48.3
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-19 97.4 118 48.3
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-19 97.4 118 48.3
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-19 97.4 118 48.3
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 7.3e-19 97.4 99 51.5
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 9.6e-19 97.1 91 52.7
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.6e-18 96.3 125 48.0
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.6e-18 96.3 123 47.2
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.1e-18 95.9 122 46.7
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.1e-18 95.9 122 46.7
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 2.8e-18 95.5 120 45.0
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.8e-18 95.5 117 50.4
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.8e-18 95.5 110 50.0
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.8e-18 95.5 114 48.2
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.8e-18 95.5 122 49.2
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.6e-18 95.1 114 52.6
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 3.6e-18 95.1 91 54.9
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 3.6e-18 95.1 116 45.7
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 8.1e-18 94.0 124 47.6
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.1e-18 94.0 106 50.9
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.1e-17 93.6 94 54.3
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.1e-17 93.6 94 54.3
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.1e-17 93.6 116 44.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.1e-17 93.6 112 49.1
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.1e-17 93.6 114 47.4
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.4e-17 93.2 89 50.6
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.4e-17 92.4 116 44.8
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.4e-17 92.4 115 44.3
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 2.4e-17 92.4 125 43.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.4e-17 92.4 112 47.3
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 4.0e-17 91.7 119 43.7
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 4.0e-17 91.7 95 51.6
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 4.0e-17 91.7 120 44.2
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 4.0e-17 91.7 125 42.4
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 5.3e-17 91.3 92 52.2
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.3e-17 91.3 116 49.1
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 5.3e-17 91.3 114 45.6
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.3e-17 91.3 112 48.2
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.3e-17 91.3 87 58.6
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 5.3e-17 91.3 87 58.6
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 5.3e-17 91.3 110 48.2
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.3e-17 91.3 111 47.7
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 9.0e-17 90.5 123 44.7
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 9.0e-17 90.5 119 48.7
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.2e-16 90.1 83 53.0
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.2e-16 90.1 112 44.6
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.2e-16 90.1 125 44.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.5e-16 89.7 116 44.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.5e-16 89.7 117 47.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.0e-16 89.4 99 48.5
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 2.0e-16 89.4 114 43.9
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.0e-16 89.4 118 47.5
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.4e-16 88.6 90 55.6
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 3.4e-16 88.6 111 42.3
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 4.5e-16 88.2 119 44.5
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 5.8e-16 87.8 119 43.7
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 7.6e-16 87.4 120 46.7
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.6e-16 87.4 120 42.5
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 9.9e-16 87.0 91 49.5
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 9.9e-16 87.0 118 47.5
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 9.9e-16 87.0 96 50.0
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 9.9e-16 87.0 83 54.2
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.3e-15 86.7 120 42.5
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.8e-15 85.1 86 53.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.8e-15 85.1 109 44.0
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 4.9e-15 84.7 127 41.7
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 4.9e-15 84.7 93 46.2
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 6.4e-15 84.3 104 45.2
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 6.4e-15 84.3 115 43.5
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 8.4e-15 84.0 124 44.4
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.1e-14 83.6 81 55.6
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 2.4e-14 82.4 118 44.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.2e-14 81.6 125 40.8
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.1e-14 80.9 100 43.0
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 9.3e-14 80.5 86 44.2
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.2e-13 80.1 91 48.4
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.2e-13 80.1 115 46.1
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.6e-13 79.7 100 44.0
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.7e-13 79.0 83 47.0
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.5e-13 78.6 87 46.0
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 6.0e-13 77.8 92 43.5
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 6.0e-13 77.8 92 43.5
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.9e-13 77.4 84 48.8
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.8e-12 76.3 102 45.1
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.8e-12 76.3 100 44.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.8e-12 76.3 123 44.7
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 5.1e-12 74.7 92 42.4
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 5.1e-12 74.7 92 42.4
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 5.1e-12 74.7 103 42.7
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 5.1e-12 74.7 119 40.3
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.7e-12 74.3 84 44.0
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 6.7e-12 74.3 100 42.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 8.7e-12 73.9 97 45.4
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 8.7e-12 73.9 81 42.0
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 8.7e-12 73.9 97 46.4
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.1e-11 73.6 99 40.4
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.1e-11 73.6 123 43.9
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.5e-11 73.2 87 44.8
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.5e-11 73.2 87 47.1
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.5e-11 73.2 101 40.6
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.9e-11 72.8 101 39.6
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.5e-11 72.4 111 36.0
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 5.6e-11 71.2 112 39.3
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 5.6e-11 71.2 83 44.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 7.4e-11 70.9 122 40.2
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 9.6e-11 70.5 89 44.9
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 9.6e-11 70.5 89 44.9
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 9.6e-11 70.5 100 40.0
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 9.6e-11 70.5 87 46.0
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.6e-11 70.5 92 42.4
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-10 70.1 82 42.7
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.3e-10 70.1 111 43.2
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.6e-10 69.7 82 46.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.6e-10 69.7 82 46.3
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.6e-10 69.7 82 46.3
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.6e-10 69.7 101 38.6
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-10 69.3 84 41.7
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-10 69.3 87 42.5
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.1e-10 69.3 83 48.2
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 2.1e-10 69.3 101 37.6
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.1e-10 69.3 83 48.2
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 2.1e-10 69.3 101 37.6
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.8e-10 68.9 88 40.9
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.8e-10 68.9 98 39.8
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 3.6e-10 68.6 82 43.9
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 3.6e-10 68.6 102 39.2
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 6.2e-10 67.8 84 41.7
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.8e-09 66.2 103 38.8
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.4e-09 65.9 113 38.1
ECA232G3842 Erigeron canadensis HOM05D003592 ORTHO05D029303 2.4e-09 65.9 124 37.1
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.4e-09 65.9 108 37.0
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.9e-09 64.3 101 36.6
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.5e-08 63.2 81 43.2
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.5e-08 63.2 107 36.4
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.5e-08 61.6 111 38.7
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 4.5e-08 61.6 92 38.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.6e-08 60.8 80 42.5
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-07 60.1 62 51.6


User provided reference genes

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