Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 6.5e-82 307.8 207 100.0
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.6e-41 171.8 192 62.0
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 1.4e-39 167.2 208 66.3
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 3.3e-33 146.0 117 64.1
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.1e-28 131.0 209 41.6
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.0e-26 122.9 123 55.3
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 5.1e-26 122.1 111 62.2
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 2.5e-25 119.8 119 54.6
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 9.5e-25 117.9 133 48.9
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.2e-24 117.5 131 45.0
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 1.6e-24 117.1 138 49.3
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 2.1e-24 116.7 131 51.1
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 2.8e-24 116.3 116 52.6
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 2.8e-24 116.3 133 46.6
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.8e-24 116.3 89 62.9
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.8e-24 116.3 89 62.9
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 8.1e-24 114.8 133 49.6
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 8.1e-24 114.8 130 49.2
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.1e-23 114.4 131 48.1
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.1e-23 114.4 131 49.6
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.1e-23 114.4 131 49.6
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.1e-23 114.4 113 56.6
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.4e-23 114.0 89 62.9
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.4e-23 114.0 116 52.6
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.8e-23 113.6 87 62.1
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.3e-23 113.2 216 44.9
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 2.3e-23 113.2 132 47.0
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.1e-23 112.8 131 47.3
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 3.1e-23 112.8 122 50.8
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 3.1e-23 112.8 117 53.8
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 3.1e-23 112.8 129 48.8
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 5.2e-23 112.1 129 47.3
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 5.2e-23 112.1 131 46.6
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 6.8e-23 111.7 132 49.2
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 8.9e-23 111.3 87 60.9
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.2e-22 110.9 135 45.2
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.2e-22 110.9 119 50.4
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.5e-22 110.5 125 49.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.0e-22 110.2 118 51.7
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 2.6e-22 109.8 131 46.6
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 2.6e-22 109.8 131 46.6
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 3.4e-22 109.4 131 46.6
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.4e-22 109.4 131 47.3
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.4e-22 109.4 114 54.4
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 4.4e-22 109.0 87 59.8
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 4.4e-22 109.0 131 47.3
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 4.4e-22 109.0 119 48.7
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 5.8e-22 108.6 132 47.0
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 7.5e-22 108.2 131 48.1
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 9.9e-22 107.8 131 46.6
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.3e-21 107.5 131 45.8
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-21 107.5 107 55.1
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.3e-21 107.5 131 46.6
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.3e-21 107.5 110 51.8
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.7e-21 107.1 99 54.5
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.2e-21 106.7 129 45.7
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.2e-21 106.7 110 50.0
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.9e-21 106.3 120 47.5
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.7e-21 105.9 132 45.5
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.7e-21 105.9 140 45.7
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.7e-21 105.9 130 46.9
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 4.9e-21 105.5 87 58.6
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 4.9e-21 105.5 131 44.3
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 6.4e-21 105.1 122 44.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 6.4e-21 105.1 131 45.8
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 6.4e-21 105.1 122 48.4
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 6.4e-21 105.1 129 45.0
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 8.3e-21 104.8 120 45.8
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 8.3e-21 104.8 136 45.6
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 8.3e-21 104.8 131 45.8
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.4e-20 104.0 87 58.6
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 3.2e-20 102.8 90 55.6
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 4.1e-20 102.4 86 58.1
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.1e-20 102.4 86 57.0
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 5.4e-20 102.1 86 58.1
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 5.4e-20 102.1 134 46.3
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 7.1e-20 101.7 86 57.0
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 9.2e-20 101.3 89 55.1
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.2e-19 100.9 134 42.5
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.6e-19 100.5 88 53.4
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.6e-19 100.5 88 53.4
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 2.7e-19 99.8 127 48.0
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.7e-19 99.8 137 46.0
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.7e-19 99.8 134 43.3
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 3.5e-19 99.4 135 45.2
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 3.5e-19 99.4 133 44.4
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 4.6e-19 99.0 217 37.3
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 6.0e-19 98.6 94 52.1
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 7.8e-19 98.2 119 48.7
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 7.8e-19 98.2 89 55.1
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 1.7e-18 97.1 138 42.8
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.7e-18 97.1 127 45.7
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 3.0e-18 96.3 132 42.4
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 3.0e-18 96.3 134 41.8
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.9e-18 95.9 113 48.7
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 3.9e-18 95.9 87 52.9
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 5.1e-18 95.5 86 58.1
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 5.1e-18 95.5 86 58.1
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 5.1e-18 95.5 122 46.7
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.6e-18 94.7 87 56.3
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-17 94.4 87 56.3
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-17 94.4 87 56.3
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-17 94.4 87 56.3
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.5e-17 94.0 129 43.4
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 1.9e-17 93.6 87 54.0
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.9e-17 93.6 132 43.2
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.3e-17 92.8 126 45.2
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 4.3e-17 92.4 217 53.9
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.3e-17 91.7 85 55.3
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.5e-17 91.3 85 54.1
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 1.6e-16 90.5 102 48.0
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-16 90.1 85 54.1
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 3.6e-16 89.4 117 46.2
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 4.7e-16 89.0 128 41.4
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 4.7e-16 89.0 130 40.8
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 6.2e-16 88.6 129 41.1
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 6.2e-16 88.6 120 43.3
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 2.4e-15 86.7 84 51.2
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 2.4e-15 86.7 84 51.2
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.1e-15 86.3 85 51.8
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 4.0e-15 85.9 124 40.3
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 5.2e-15 85.5 135 39.3
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 6.8e-15 85.1 84 51.2
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 6.8e-15 85.1 128 42.2
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 6.8e-15 85.1 128 42.2
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 6.8e-15 85.1 84 51.2
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.6e-14 83.2 123 44.7
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 3.4e-14 82.8 137 42.3
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.6e-14 81.6 114 45.6
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 9.9e-14 81.3 114 45.6
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.3e-13 80.9 120 39.2
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.3e-13 80.9 112 45.5
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 2.2e-13 80.1 89 44.9
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 2.2e-13 80.1 89 44.9
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 2.9e-13 79.7 128 40.6
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 3.8e-13 79.3 45 73.3
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 4.9e-13 79.0 86 43.0
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-12 77.8 89 44.9
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-12 77.8 93 43.0
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-12 77.0 126 38.1
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 1.9e-12 77.0 126 38.1
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 2.4e-12 76.6 123 36.6
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 2.4e-12 76.6 123 36.6
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 4.2e-12 75.9 86 47.7
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 7.1e-12 75.1 124 36.3
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 7.1e-12 75.1 124 36.3
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 9.2e-12 74.7 132 37.1
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.2e-11 74.3 86 47.7
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.1e-11 73.6 129 38.8
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.5e-11 72.8 134 37.3
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 4.6e-11 72.4 93 40.9
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 6.0e-11 72.0 93 41.9
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 6.0e-11 72.0 93 41.9
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 7.8e-11 71.6 87 44.8
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 2.3e-10 70.1 65 47.7
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 8.7e-10 68.2 115 38.3
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 3.3e-09 66.2 68 50.0
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 5.6e-09 65.5 119 36.1
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 2.1e-08 63.5 93 41.9
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.1e-07 59.7 121 33.9


User provided reference genes

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