Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 2.7e-76 288.5 138 100.0
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 3.6e-60 235.0 138 81.2
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 1.5e-55 219.5 129 79.8
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 8.5e-54 213.8 138 75.4
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 3.2e-53 211.8 125 80.8
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 9.4e-53 210.3 137 73.7
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 1.6e-52 209.5 128 75.8
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 2.1e-52 209.1 125 76.8
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 2.7e-52 208.8 138 71.0
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 1.0e-51 206.8 136 71.3
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 1.0e-51 206.8 138 71.0
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 1.0e-51 206.8 120 79.2
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 1.8e-51 206.1 128 73.4
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 2.3e-51 205.7 120 78.3
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 2.3e-51 205.7 129 75.2
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 3.9e-51 204.9 125 74.4
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 5.2e-51 204.5 118 78.0
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 6.7e-51 204.1 127 74.8
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 1.5e-50 203.0 128 73.4
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 2.6e-50 202.2 128 74.2
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 2.6e-50 202.2 125 75.2
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 2.6e-50 202.2 147 66.0
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 2.6e-50 202.2 138 69.6
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 3.3e-50 201.8 132 71.2
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 4.4e-50 201.4 125 70.4
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 4.4e-50 201.4 125 74.4
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 7.4e-50 200.7 125 72.8
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 9.7e-50 200.3 125 74.4
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 1.3e-49 199.9 135 66.7
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 1.7e-49 199.5 125 75.2
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 1.7e-49 199.5 125 72.0
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 2.8e-49 198.7 127 70.1
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 3.7e-49 198.4 120 72.5
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 4.8e-49 198.0 128 73.4
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 4.8e-49 198.0 128 71.9
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 8.2e-49 197.2 138 66.7
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 1.1e-48 196.8 127 73.2
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 1.4e-48 196.4 124 73.4
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 1.4e-48 196.4 138 70.3
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 2.4e-48 195.7 123 70.7
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 3.1e-48 195.3 138 65.9
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 3.1e-48 195.3 125 69.6
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 4.1e-48 194.9 125 71.2
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 7.0e-48 194.1 138 69.6
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 9.1e-48 193.7 125 69.6
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 9.1e-48 193.7 123 70.7
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 2.0e-47 192.6 125 70.4
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 2.6e-47 192.2 129 71.3
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 3.5e-47 191.8 138 66.7
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 5.9e-47 191.0 120 73.3
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 2.2e-46 189.1 107 83.2
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 3.8e-46 188.3 125 69.6
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 6.5e-46 187.6 121 70.2
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 6.5e-46 187.6 121 70.2
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 1.5e-45 186.4 124 69.4
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 1.9e-45 186.0 120 68.3
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 1.9e-45 186.0 154 60.4
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 4.2e-45 184.9 109 78.9
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 5.5e-45 184.5 107 81.3
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 7.2e-45 184.1 112 76.8
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 9.4e-45 183.7 109 73.4
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 9.4e-45 183.7 107 79.4
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 1.6e-44 183.0 125 65.6
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 1.6e-44 183.0 120 70.0
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 2.7e-44 182.2 137 62.8
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 2.7e-44 182.2 107 79.4
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 4.7e-44 181.4 107 75.7
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 4.7e-44 181.4 107 79.4
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.8e-43 179.5 128 65.6
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 8.8e-43 177.2 115 70.4
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 8.8e-43 177.2 115 70.4
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 2.0e-42 176.0 136 62.5
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 3.4e-42 175.3 115 67.8
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 4.4e-42 174.9 119 66.4
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 4.4e-42 174.9 119 66.4
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 7.5e-42 174.1 115 68.7
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 1.3e-41 173.3 119 66.4
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 2.8e-41 172.2 118 64.4
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 2.8e-41 172.2 127 63.8
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 2.8e-41 172.2 119 66.4
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 4.8e-41 171.4 108 75.0
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 4.8e-41 171.4 115 67.8
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 6.3e-41 171.0 119 65.5
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 6.3e-41 171.0 119 65.5
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 1.1e-40 170.2 119 65.5
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 2.4e-40 169.1 115 66.1
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 3.1e-40 168.7 119 63.0
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 7.0e-40 167.5 107 72.0
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 1.4e-32 143.3 93 71.0
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 1.8e-32 142.9 142 48.6
DCAR_011285 Daucus carota HOM05D006998 ORTHO05D008733 3.5e-31 138.7 120 55.8
Dinv25701 Davidia involucrata HOM05D006998 ORTHO05D008733 5.0e-30 134.8 73 83.6
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 8.6e-30 134.0 102 59.8
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 4.2e-29 131.7 95 62.1
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 5.5e-29 131.3 85 70.6
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 2.3e-27 125.9 129 49.6
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 7.5e-26 120.9 75 76.0
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 6.3e-25 117.9 108 59.3
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 6.3e-25 117.9 108 59.3
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 4.1e-24 115.2 77 68.8
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 4.1e-24 115.2 90 62.2
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 7.0e-24 114.4 89 66.3
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 6.6e-22 107.8 78 64.1
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 2.5e-21 105.9 72 63.9
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 1.6e-20 103.2 96 47.9
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 1.4e-19 100.1 73 60.3
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 1.4e-19 100.1 70 61.4
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 1.5e-18 96.7 70 61.4
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 2.7e-15 85.9 68 58.8
Sed0022519 Sechium edule HOM05D006998 ORTHO05D008733 2.7e-15 85.9 56 67.9
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 4.3e-13 78.6 79 46.8
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 1.2e-12 77.0 67 59.7
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 6.2e-12 74.7 70 51.4
BcaB01g01217 Brassica carinata HOM05D006998 ORTHO05D008733 1.1e-11 73.9 74 52.7
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 1.8e-11 73.2 67 50.7
Cre09.g413300 Chlamydomonas reinhardtii HOM05D006998 ORTHO05D008733 6.8e-11 71.2 60 53.3
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 6.4e-09 64.7 81 45.7
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 2.1e-07 59.7 49 51.0


User provided reference genes

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