Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 3578.9 1832 100.0
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 2709.9 1864 76.5
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 2696.0 1837 75.8
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2155.6 1865 61.9
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1956.4 1869 55.7
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1938.7 1987 54.2
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1918.3 1866 55.9
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1912.1 1964 54.0
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1891.7 1854 54.9
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1891.3 1858 54.8
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1888.2 1857 54.5
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1876.7 1864 54.5
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1875.9 1865 54.6
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1873.6 1866 54.4
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1872.4 1869 54.4
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1870.9 1869 54.5
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1849.7 1863 53.7
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1847.0 1864 53.8
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1840.1 1868 53.7
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1837.4 1870 53.9
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1824.3 1952 52.3
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1800.4 1865 52.7
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1797.7 1704 56.5
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1791.2 1867 52.5
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1781.1 1866 51.4
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1776.9 1870 52.1
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1775.0 1878 52.8
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1770.7 1863 52.2
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1762.7 1868 51.7
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1757.7 1869 51.7
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1755.7 1866 51.0
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1752.6 1872 51.4
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1751.5 1867 50.9
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1746.1 1862 51.6
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1738.0 1884 51.0
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1736.5 1866 51.1
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1734.2 1863 51.3
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1729.1 1901 50.0
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1728.0 1863 51.3
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1724.1 1880 51.4
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1723.0 1873 51.4
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1722.2 1886 51.2
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1715.3 1867 51.0
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1711.8 1864 51.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1705.6 2010 48.6
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1701.0 2051 48.1
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1678.3 1881 49.1
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1677.5 1868 49.9
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1667.9 1512 59.3
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1666.0 1866 49.4
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1665.2 1718 52.8
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1660.2 1844 51.6
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1648.6 1876 49.4
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1635.2 1876 49.0
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1614.4 1869 48.0
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1614.0 1867 48.6
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1614.0 1865 48.4
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1613.6 1865 48.5
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1612.8 1867 48.5
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1612.4 1865 48.4
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1609.7 1461 59.1
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1609.7 1887 48.5
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1604.3 1737 50.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1603.6 1868 48.3
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1602.8 1865 48.2
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1602.8 1865 48.2
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1602.8 1865 48.2
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1593.6 1965 46.8
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1580.8 1863 47.9
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1550.4 1870 47.7
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1538.1 1896 47.6
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1523.1 1934 46.3
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1518.4 1515 54.7
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1510.0 1653 50.7
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1508.0 1839 48.0
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1488.4 1869 46.4
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1465.3 1871 45.4
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1463.4 1707 48.7
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1399.8 1366 54.4
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1369.8 1877 43.2
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1347.0 1907 43.3
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1320.4 1354 53.8
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1292.7 2073 40.0
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1280.8 1221 55.0
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1228.4 1302 53.0
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1227.2 1863 40.6
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1202.2 1399 49.5
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1153.3 1180 55.4
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1142.5 1878 39.9
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 7.1e-281 971.8 974 55.1
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 3.0e-263 913.3 835 57.5
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.8e-252 877.5 1023 48.0
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 5.8e-251 872.5 943 53.1
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 1.6e-219 768.1 946 46.6
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 2.0e-219 767.7 1953 30.6
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 2.7e-211 740.7 645 58.6
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.4e-196 691.8 735 53.1
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 3.3e-193 680.6 862 46.3
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.1e-192 677.9 643 55.7
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.6e-174 617.8 1881 28.4
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.9e-172 611.7 827 43.4
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.1e-167 594.3 788 43.9
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.6e-163 582.0 611 50.6
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 2.4e-156 558.1 707 45.5
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.9e-154 550.8 636 46.7
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.8e-144 517.3 593 50.3
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 7.6e-142 510.0 531 52.2
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.9e-135 486.9 529 49.3
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 7.4e-121 440.3 408 57.4
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.7e-117 429.1 428 52.6
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.9e-114 417.9 639 41.2
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 3.9e-106 391.3 430 50.5
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.8e-104 385.2 377 53.8
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 2.5e-100 372.1 435 49.0
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.2e-99 369.8 346 57.8
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.3e-98 365.5 462 47.4
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.2e-98 364.4 429 45.7
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.2e-92 344.7 342 53.8
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 4.0e-90 338.2 349 51.6
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.8e-88 332.0 336 51.8
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.3e-85 323.2 399 48.9
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 4.1e-79 301.6 549 38.3
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 7.8e-78 297.4 447 38.0
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 3.3e-76 292.0 627 32.9
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 1.5e-65 256.5 302 46.7
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 7.1e-63 247.7 211 63.5
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.9e-60 239.6 279 46.2
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.8e-58 233.0 337 40.7
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.6e-57 229.2 258 49.6
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 7.6e-57 227.6 225 56.4
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 9.2e-55 220.7 194 62.4
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.6e-49 201.1 190 52.6
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 9.9e-49 200.7 281 44.1
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.4e-42 179.5 264 42.4
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.3e-42 178.3 228 46.9
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 6.4e-40 171.4 139 62.6
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 6.4e-40 171.4 855 24.0
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 8.4e-40 171.0 191 51.8
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.5e-38 165.6 213 45.1
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 1.3e-37 163.7 132 66.7
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 1.1e-36 160.6 822 24.1
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 3.3e-36 159.1 130 60.8
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 7.4e-36 157.9 146 54.1
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 9.3e-31 141.0 176 44.3
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.7e-30 139.4 224 39.7
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 4.6e-30 138.7 143 51.0
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 2.3e-29 136.3 137 56.2
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 8.7e-29 134.4 159 47.8
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.5e-28 132.9 195 42.6
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 7.4e-28 131.3 123 48.8
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 9.6e-28 131.0 131 54.2
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.4e-26 127.1 179 43.0
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.5e-25 123.6 134 54.5
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.8e-24 119.0 146 44.5
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 3.0e-21 109.4 187 34.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 1.1e-20 107.5 83 62.7
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.4e-18 99.8 110 46.4
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 2.0e-17 96.7 93 49.5
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.0e-17 96.7 73 60.3
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.4e-15 90.5 105 47.6
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-14 87.0 102 47.1
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 2.5e-12 79.7 123 37.4
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 8.2e-11 74.7 81 54.3
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 9.0e-10 71.2 52 67.3
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 2.6e-09 69.7 56 55.4
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 7.7e-09 68.2 109 35.8
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 1.0e-08 67.8 56 55.4
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.3e-08 67.4 84 44.0
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 1.7e-08 67.0 53 69.8
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.8e-08 65.9 62 51.6
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 3.2e-07 62.8 64 45.3
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 4.2e-07 62.4 111 36.9
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.2e-06 60.8 41 68.3
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.2e-06 60.8 41 68.3
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 7.9e-06 58.2 79 41.8


User provided reference genes

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