Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 0.0e+00 1421.0 718 100.0
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 0.0e+00 1098.6 699 79.4
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 5.9e-308 1060.4 722 75.8
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.4e-285 985.3 722 66.2
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 3.0e-283 978.4 699 69.4
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 3.1e-280 968.4 715 66.9
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 5.8e-279 964.1 729 64.7
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 3.7e-278 961.4 719 65.9
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 4.6e-276 954.5 723 65.4
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 3.3e-274 948.3 719 66.6
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 2.1e-273 945.7 727 65.3
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 3.6e-273 944.9 735 63.3
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 4.7e-273 944.5 736 63.0
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 4.7e-273 944.5 733 63.4
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 6.2e-273 944.1 726 62.9
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 8.1e-273 943.7 726 64.6
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 2.6e-271 938.7 726 64.5
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 9.9e-271 936.8 727 64.1
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.3e-270 936.4 735 63.1
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 7.1e-269 930.6 727 64.4
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 3.5e-268 928.3 719 63.8
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 6.0e-268 927.5 723 63.9
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.0e-267 926.8 728 63.2
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.7e-267 926.0 715 64.1
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 6.6e-267 924.1 726 62.3
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 8.7e-267 923.7 728 63.6
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 1.5e-266 922.9 728 63.7
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.5e-266 922.2 723 63.5
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 3.3e-266 921.8 715 63.6
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 4.3e-266 921.4 723 63.5
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 7.3e-266 920.6 723 63.3
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.3e-265 919.8 727 62.2
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.6e-265 918.3 723 63.3
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 4.8e-265 917.9 717 63.3
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 6.2e-265 917.5 734 62.8
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.4e-264 916.4 714 63.9
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.2e-263 913.3 716 63.1
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 2.0e-263 912.5 715 62.8
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 3.4e-263 911.8 721 62.8
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 4.4e-263 911.4 720 62.4
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 7.6e-263 910.6 721 62.6
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.9e-263 910.2 727 62.2
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 3.8e-262 908.3 790 58.5
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 9.3e-261 903.7 721 62.7
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 9.3e-261 903.7 723 62.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.2e-260 903.3 763 60.2
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 7.9e-260 900.6 729 61.2
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 1.0e-259 900.2 729 61.9
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.3e-259 899.8 721 62.6
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 5.6e-258 894.4 730 60.7
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 9.6e-258 893.6 721 61.4
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 2.8e-257 892.1 719 62.6
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 1.4e-256 889.8 759 59.0
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.8e-256 889.4 732 61.1
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 1.8e-256 889.4 721 60.1
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 1.5e-255 886.3 716 63.3
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.5e-255 886.3 719 61.9
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 3.4e-255 885.2 722 60.4
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 4.5e-255 884.8 725 59.9
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 3.2e-253 878.6 724 60.4
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.8e-251 872.8 744 60.1
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.3e-251 872.5 725 60.1
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 5.1e-251 871.3 734 60.1
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.6e-249 866.3 732 59.4
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.1e-248 862.1 716 60.3
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.0e-247 859.4 726 59.4
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.5e-242 843.2 702 59.1
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 9.0e-240 833.9 730 57.8
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 2.0e-239 832.8 726 59.8
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 2.6e-239 832.4 643 63.3
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 2.2e-238 829.3 701 58.6
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 3.7e-233 812.0 717 58.7
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 1.1e-229 800.4 671 60.1
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 1.2e-228 797.0 665 61.7
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 7.2e-221 771.2 721 56.6
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.8e-219 766.5 719 55.2
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 2.2e-217 759.6 696 55.5
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.2e-217 759.6 742 53.2
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 3.2e-213 745.7 604 62.1
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.6e-212 743.4 608 60.4
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 3.6e-212 742.3 819 51.2
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 3.1e-208 729.2 606 60.1
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 5.3e-208 728.4 615 60.3
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 3.5e-207 725.7 731 52.8
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.2e-206 723.0 759 51.9
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.9e-206 722.6 608 59.7
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.6e-204 716.8 736 51.2
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 7.5e-202 708.0 618 60.5
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.5e-189 667.2 610 55.4
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.2e-186 657.5 491 65.6
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.2e-183 647.5 728 49.0
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 4.6e-183 645.6 493 63.7
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 7.3e-181 638.3 636 52.7
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 2.7e-175 619.8 616 53.7
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 6.6e-174 615.1 454 65.9
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 5.6e-173 612.1 527 60.7
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 1.1e-160 571.2 721 44.4
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.2e-159 567.8 455 60.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 4.3e-149 532.7 412 62.9
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 3.6e-148 529.6 732 41.9
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 6.9e-147 525.4 603 46.6
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.1e-136 491.5 582 46.4
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 2.6e-130 470.3 442 55.2
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 2.2e-124 450.7 383 61.1
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.3e-118 430.6 626 43.0
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.0e-113 412.9 546 42.7
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.6e-111 407.9 346 60.4
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 6.1e-111 406.0 840 33.5
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.6e-103 381.3 479 44.5
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 8.0e-95 352.4 289 59.2
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.5e-93 348.2 469 43.1
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 3.6e-79 300.4 229 67.2
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.1e-72 278.9 221 60.6
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 2.6e-53 214.5 625 29.8
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.3e-52 212.2 125 68.8
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.3e-52 209.5 175 59.4
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.6e-50 205.3 317 39.7
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 4.6e-50 203.8 245 43.7
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.1e-48 199.1 188 56.9
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.7e-44 185.3 213 49.3
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.5e-40 172.2 306 34.3
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.5e-37 162.2 126 62.7
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.7e-33 148.7 126 60.3
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.3e-32 144.1 114 54.4
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 9.0e-30 136.3 103 63.1
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-27 129.4 100 61.0
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.3e-23 115.9 130 48.5
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.3e-20 105.9 72 72.2
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 1.3e-20 105.9 105 54.3
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.1e-18 98.6 171 39.8
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 6.7e-17 93.6 279 29.0
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 4.3e-16 90.9 66 62.1
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 7.4e-16 90.1 80 61.2
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 3.8e-12 77.8 74 58.1
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 4.2e-11 74.3 61 54.1
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 2.1e-10 72.0 44 68.2
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 3.5e-10 71.2 44 68.2
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 6.7e-09 67.0 75 49.3
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 6.7e-09 67.0 59 55.9
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 6.9e-06 57.0 43 60.5
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 9.0e-06 56.6 39 66.7


User provided reference genes

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