Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0254551 Helianthus annuus HOM05D001218 ORTHO05D022331 1.7e-34 148.7 70 100.0
HanXRQChr16g0512491 Helianthus annuus HOM05D001218 ORTHO05D004088 3.1e-12 74.7 63 61.9
Lsat_1_v5_gn_9_48180 Lactuca sativa HOM05D001218 ORTHO05D004088 5.3e-12 73.9 63 60.3
Actinidia37903 Actinidia chinensis HOM05D001218 ORTHO05D004088 2.6e-11 71.6 61 59.0
HanXRQChr05g0161401 Helianthus annuus HOM05D001218 ORTHO05D004088 4.5e-11 70.9 63 58.7
ECA232G2106 Erigeron canadensis HOM05D001218 ORTHO05D004088 5.9e-11 70.5 63 55.6
MSTRG.1008 Avicennia marina HOM05D001218 ORTHO05D004088 2.2e-10 68.6 61 57.4
MSTRG.24523 Avicennia marina HOM05D001218 ORTHO05D004088 2.9e-10 68.2 61 55.7
CSS0003035 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 2.9e-10 68.2 61 55.7
CAN.G1330.23 Capsicum annuum HOM05D001218 ORTHO05D004088 3.8e-10 67.8 61 57.4
Migut.C00344 Erythranthe guttata HOM05D001218 ORTHO05D004088 5.0e-10 67.4 61 55.7
Lj4C3G12 Lonicera japonica HOM05D001218 ORTHO05D004088 5.0e-10 67.4 61 55.7
Nitab4.5_0000464g0120 Nicotiana tabacum HOM05D001218 ORTHO05D004088 6.5e-10 67.0 61 57.4
Nitab4.5_0001309g0150 Nicotiana tabacum HOM05D001218 ORTHO05D004088 6.5e-10 67.0 61 57.4
Nitab4.5_0003423g0060 Nicotiana tabacum HOM05D001218 ORTHO05D004088 6.5e-10 67.0 61 57.4
Oeu035766.1 Olea europaea HOM05D000150 ORTHO05D000108 6.5e-10 67.0 61 55.7
Oeu035767.1 Olea europaea HOM05D001218 ORTHO05D004088 6.5e-10 67.0 61 55.7
Solyc04g082880.4 Solanum lycopersicum HOM05D001218 ORTHO05D004088 6.5e-10 67.0 61 57.4
Sopen04g036520 Solanum pennellii HOM05D001218 ORTHO05D004088 6.5e-10 67.0 61 57.4
PGSC0003DMG400010007 Solanum tuberosum HOM05D001218 ORTHO05D004088 6.5e-10 67.0 61 57.4
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 8.5e-10 66.6 61 55.7
Dinv23340 Davidia involucrata HOM05D001218 ORTHO05D004088 8.5e-10 66.6 63 54.0
CSS0013185 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 1.1e-09 66.2 61 54.1
Migut.N02993 Erythranthe guttata HOM05D001218 ORTHO05D004088 1.1e-09 66.2 61 54.1
Oeu042498.1 Olea europaea HOM05D001218 ORTHO05D004088 1.1e-09 66.2 61 55.7
Hma1.2p1_0489F.1_g164180 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 1.5e-09 65.9 61 54.1
Peaxi162Scf00064g01432 Petunia axillaris HOM05D001218 ORTHO05D004088 1.5e-09 65.9 61 55.7
Actinidia15552 Actinidia chinensis HOM05D001218 ORTHO05D004088 1.9e-09 65.5 61 55.7
CAN.G208.42 Capsicum annuum HOM05D001218 ORTHO05D004088 1.9e-09 65.5 61 55.7
Duzib116G0454 Durio zibethinus HOM05D001218 ORTHO05D004088 1.9e-09 65.5 37 78.4
Oeu064732.1 Olea europaea HOM05D001218 ORTHO05D004088 1.9e-09 65.5 61 54.1
Peaxi162Scf00385g00622 Petunia axillaris HOM05D001218 ORTHO05D004088 1.9e-09 65.5 61 55.7
Rhsim06G0002000 Rhododendron simsii HOM05D001218 ORTHO05D004088 1.9e-09 65.5 61 54.1
Solyc12g095760.2 Solanum lycopersicum HOM05D001218 ORTHO05D004088 1.9e-09 65.5 61 55.7
Sopen12g031660 Solanum pennellii HOM05D001218 ORTHO05D004088 1.9e-09 65.5 61 55.7
PGSC0003DMG400029309 Solanum tuberosum HOM05D001218 ORTHO05D004088 1.9e-09 65.5 61 55.7
MSTRG.24899 Avicennia marina HOM05D001218 ORTHO05D004088 2.5e-09 65.1 61 54.1
vmacro21744 Vaccinium macrocarpon HOM05D001218 ORTHO05D004088 2.5e-09 65.1 61 54.1
Duzib093G2014 Durio zibethinus HOM05D001218 ORTHO05D004088 3.2e-09 64.7 37 75.7
Gohir.A02G087100 Gossypium hirsutum HOM05D001218 ORTHO05D004088 3.2e-09 64.7 37 75.7
MD06G1002300 Malus domestica HOM05D001218 ORTHO05D004088 3.2e-09 64.7 37 75.7
CiPaw.07G131800 Carya illinoinensis HOM05D001218 ORTHO05D004088 4.2e-09 64.3 37 73.0
Prupe.5G003400 Prunus persica HOM05D001218 ORTHO05D004088 4.2e-09 64.3 37 75.7
Cpa.g.c24967.5 Carica papaya HOM05D001218 ORTHO05D004088 5.5e-09 63.9 37 78.4
AUR62035185 Chenopodium quinoa HOM05D001218 ORTHO05D004088 5.5e-09 63.9 61 52.5
AUR62043319 Chenopodium quinoa HOM05D001218 ORTHO05D004088 5.5e-09 63.9 61 52.5
Ciclev10000595m.g Citrus clementina HOM05D001218 ORTHO05D004088 5.5e-09 63.9 37 75.7
PGR031G3703 Punica granatum HOM05D001218 ORTHO05D004088 5.5e-09 63.9 37 73.0
TAR628G0316 Trochodendron aralioides HOM05D001218 ORTHO05D004088 5.5e-09 63.9 61 52.5
Thecc.08G098300 Theobroma cacao HOM05D001218 ORTHO05D004088 7.2e-09 63.5 37 75.7
GSVIVG01013442001 Vitis vinifera HOM05D001218 ORTHO05D004088 7.2e-09 63.5 61 54.1
Aqoxy5G00952 Aquilegia oxysepala HOM05D001218 ORTHO05D004088 9.4e-09 63.2 61 54.1
EL10Ac1g01822 Beta vulgaris HOM05D001218 ORTHO05D004088 9.4e-09 63.2 61 52.5
DCAR_017621 Daucus carota HOM05D001218 ORTHO05D004088 1.2e-08 62.8 61 52.5
FvH4_5g26380 Fragaria vesca HOM05D001218 ORTHO05D004088 1.2e-08 62.8 37 73.0
FAN04G0409 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.2e-08 62.8 38 71.1
FAN08G1986 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.2e-08 62.8 37 73.0
FAN13G0530 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.2e-08 62.8 37 73.0
FAN18G2420 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.2e-08 62.8 37 73.0
Gohir.D02G101900 Gossypium hirsutum HOM05D001218 ORTHO05D004088 1.2e-08 62.8 37 73.0
Gorai.005G115600 Gossypium raimondii HOM05D001218 ORTHO05D004088 1.2e-08 62.8 37 73.0
Hma1.2p1_0810F.1_g221990 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 1.2e-08 62.8 37 73.0
Hund01814 Selenicereus undatus HOM05D001218 ORTHO05D004088 1.2e-08 62.8 61 50.8
Eucgr.F03611 Eucalyptus grandis HOM05D001218 ORTHO05D004088 1.6e-08 62.4 37 73.0
Medtr1g035230 Medicago truncatula HOM05D001218 ORTHO05D004088 1.6e-08 62.4 37 73.0
CANSAT25G3586 Cannabis sativa HOM05D001218 ORTHO05D004088 2.1e-08 62.0 37 73.0
ECA233G0383 Erigeron canadensis HOM05D001218 ORTHO05D004088 2.1e-08 62.0 61 50.8
Nn5g31069 Nelumbo nucifera HOM05D001218 ORTHO05D004088 2.1e-08 62.0 32 78.1
Atru.chr13.35 Acer truncatum HOM05D001218 ORTHO05D004088 2.7e-08 61.6 37 73.0
PSO017G6550 Papaver somniferum HOM05D001218 ORTHO05D004088 2.7e-08 61.6 37 70.3
PSO170G0003 Papaver somniferum HOM05D001218 ORTHO05D004088 2.7e-08 61.6 37 70.3
Sc02g0009320 Simmondsia chinensis HOM05D001218 ORTHO05D004088 2.7e-08 61.6 61 50.8
TWI12G0956 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 2.7e-08 61.6 37 70.3
arahy.Tifrunner.gnm1.ann1.BFE9YH Arachis hypogaea HOM05D001218 ORTHO05D004088 3.6e-08 61.2 37 70.3
Cfa014150 Carpinus fangiana HOM05D001218 ORTHO05D004088 3.6e-08 61.2 37 70.3
Haze_22874 Corylus avellana HOM05D001218 ORTHO05D004088 3.6e-08 61.2 37 70.3
Lsat_1_v5_gn_8_26721 Lactuca sativa HOM05D001218 ORTHO05D004088 3.6e-08 61.2 61 50.8
Lj2g0017094 Lotus japonicus HOM05D001218 ORTHO05D004088 3.6e-08 61.2 37 70.3
ClCG11G019100 Citrullus lanatus HOM05D001218 ORTHO05D004088 4.7e-08 60.8 37 70.3
MELO3C017063.2 Cucumis melo HOM05D001218 ORTHO05D004088 4.7e-08 60.8 37 70.3
DCAR_013949 Daucus carota HOM05D001218 ORTHO05D004088 4.7e-08 60.8 61 50.8
Psat6g131840 Pisum sativum HOM05D001218 ORTHO05D004088 4.7e-08 60.8 37 70.3
TPR.G18596 Trifolium pratense HOM05D001218 ORTHO05D004088 4.7e-08 60.8 37 70.3
TAR376G0228 Trochodendron aralioides HOM05D001218 ORTHO05D004088 4.7e-08 60.8 61 52.5
HPP92_007461 Vanilla planifolia HOM05D001218 ORTHO05D004088 4.7e-08 60.8 61 50.8
CsaV3_4G037690 Cucumis sativus L. HOM05D001218 ORTHO05D004088 6.1e-08 60.5 37 70.3
Lalb_Chr17g0338171 Lupinus albus HOM05D001218 ORTHO05D004088 6.1e-08 60.5 32 78.1
QL02p016004 Quercus lobata HOM05D001218 ORTHO05D004088 6.1e-08 60.5 37 67.6
CiPaw.08G078100 Carya illinoinensis HOM05D001218 ORTHO05D004088 8.0e-08 60.1 61 50.8
ECA233G6219 Erigeron canadensis HOM05D001218 ORTHO05D004088 8.0e-08 60.1 37 70.3
Eucgr.F01823 Eucalyptus grandis HOM05D001218 ORTHO05D004088 8.0e-08 60.1 37 70.3
Sed0027532 Sechium edule HOM05D001218 ORTHO05D004088 8.0e-08 60.1 37 67.6
HanXRQChr08g0216771 Helianthus annuus HOM05D001218 ORTHO05D004088 1.0e-07 59.7 61 49.2
RcHm_v2.0_Chr7g0217221 Rosa chinensis HOM05D001218 ORTHO05D004088 1.0e-07 59.7 32 75.0
TAR625G0052 Trochodendron aralioides HOM05D001218 ORTHO05D004088 1.0e-07 59.7 37 67.6
Ca_12496_v3 Cicer arietinum L. HOM05D001218 ORTHO05D004088 1.4e-07 59.3 32 78.1
Hund01817 Selenicereus undatus HOM05D001218 ORTHO05D004088 1.4e-07 59.3 61 47.5
Lsat_1_v5_gn_2_3161 Lactuca sativa HOM05D001218 ORTHO05D004088 1.8e-07 58.9 32 75.0
Lalb_Chr10g0095321 Lupinus albus HOM05D001218 ORTHO05D004088 1.8e-07 58.9 37 67.6
Manes.18G001100 Manihot esculenta HOM05D001218 ORTHO05D004088 1.8e-07 58.9 37 67.6
Potri.005G257800 Populus trichocarpa HOM05D001218 ORTHO05D004088 1.8e-07 58.9 37 70.3
Sabra05G0199700 Salix brachista HOM05D001218 ORTHO05D004088 1.8e-07 58.9 37 70.3
TWI36G0968 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 1.8e-07 58.9 37 67.6
VMungo1215G2664 Vigna mungo HOM05D001218 ORTHO05D004088 1.8e-07 58.9 37 70.3
Zm00001eb188910 Zea mays HOM05D001218 ORTHO05D004088 1.8e-07 58.9 39 64.1
arahy.Tifrunner.gnm1.ann1.H559FZ Arachis hypogaea HOM05D001218 ORTHO05D004088 2.3e-07 58.5 37 67.6
MBI19_g39687_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D022331 2.3e-07 58.5 41 63.4
Phvul.003G009600 Phaseolus vulgaris HOM05D001218 ORTHO05D004088 2.3e-07 58.5 37 67.6
Sed0013544 Sechium edule HOM05D001218 ORTHO05D004088 2.3e-07 58.5 37 67.6
SGA_v2.0_scaffold161G37861 Striga asiatica HOM05D001218 ORTHO05D004088 2.3e-07 58.5 27 85.2
MBI04_g42538_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 3.0e-07 58.2 37 64.9
MBI18_g13002_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D022331 3.0e-07 58.2 28 82.1
Psat7g019920 Pisum sativum HOM05D001947 ORTHO05D015328 3.0e-07 58.2 37 64.9
SEGI_18001 Sequoiadendron giganteum HOM05D001218 ORTHO05D004088 3.0e-07 58.2 32 75.0
THA.LOC104812017 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 3.0e-07 58.2 37 67.6
ATR0605G031 Amborella trichopoda HOM05D001218 ORTHO05D004088 4.0e-07 57.8 61 47.5
CARHR070100 Cardamine hirsuta HOM05D001218 ORTHO05D004088 4.0e-07 57.8 37 64.9
Glyma.07G160500 Glycine max HOM05D001218 ORTHO05D004088 4.0e-07 57.8 37 67.6
Glyma.20G007400 Glycine max HOM05D001218 ORTHO05D004088 4.0e-07 57.8 37 67.6
Nn6g31597 Nelumbo nucifera HOM05D001218 ORTHO05D004088 4.0e-07 57.8 32 71.9
Sp5g31710 Schrenkiella parvula HOM05D001218 ORTHO05D004088 4.0e-07 57.8 37 64.9
THA.LOC104813730 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 4.0e-07 57.8 37 64.9
CDE10G0658 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 5.2e-07 57.4 37 64.9
Thhalv10007087m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 6.7e-07 57.0 63 44.4
HanXRQChr09g0243651 Helianthus annuus HOM05D001737 ORTHO05D004088 6.7e-07 57.0 32 81.2
HanXRQChr14g0427931 Helianthus annuus HOM05D001218 ORTHO05D004088 6.7e-07 57.0 37 67.6
Potri.002G003100 Populus trichocarpa HOM05D001218 ORTHO05D004088 6.7e-07 57.0 37 67.6
THA.LOC104804960 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 6.7e-07 57.0 37 67.6
Aa31LG7G5130 Aethionema arabicum HOM05D001218 ORTHO05D004088 8.8e-07 56.6 32 68.8
AL1G33980 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 8.8e-07 56.6 32 68.8
AT1G20950 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 8.8e-07 56.6 32 68.8
BcaC08g47163 Brassica carinata HOM05D001218 ORTHO05D004088 8.8e-07 56.6 37 62.2
BcaC08g47232 Brassica carinata HOM05D001218 ORTHO05D004088 8.8e-07 56.6 37 62.2
A07p42210 Brassica napus HOM05D001218 ORTHO05D004088 8.8e-07 56.6 37 62.2
BraA07t31750Z Brassica rapa HOM05D001218 ORTHO05D004088 8.8e-07 56.6 37 62.2
Carub.0001s2042 Capsella rubella HOM05D001218 ORTHO05D004088 8.8e-07 56.6 32 68.8
CARHR021410 Cardamine hirsuta HOM05D001218 ORTHO05D004088 8.8e-07 56.6 32 68.8
Thhalv10018291m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 8.8e-07 56.6 37 62.2
MBI01_g22962_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 8.8e-07 56.6 60 48.3
Sp1g18650 Schrenkiella parvula HOM05D001218 ORTHO05D004088 8.8e-07 56.6 32 68.8
Zm00001eb252630 Zea mays HOM05D001218 ORTHO05D004088 8.8e-07 56.6 39 61.5
BcaB03g12841 Brassica carinata HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
BcaB07g32089 Brassica carinata HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
BcaC05g26002 Brassica carinata HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
BcaC07g39066 Brassica carinata HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
A06p16940 Brassica napus HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
A08p29140 Brassica napus HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
C05p19600 Brassica napus HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
C08p20520 Brassica napus HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
BolC5t30663H Brassica oleracea HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
BolC8t49679H Brassica oleracea HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
BraA06t24804Z Brassica rapa HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
BraA08t34850Z Brassica rapa HOM05D001218 ORTHO05D004088 1.2e-06 56.2 32 68.8
Manes.05G129500 Manihot esculenta HOM05D001218 ORTHO05D004088 1.5e-06 55.8 32 68.8
Os02g0714200 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 1.5e-06 55.8 39 61.5
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 1.5e-06 55.8 37 62.2
AL2G36690 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 2.0e-06 55.5 32 65.6
AT1G76550 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 2.0e-06 55.5 32 65.6
Carub.0002s2346 Capsella rubella HOM05D001218 ORTHO05D004088 2.0e-06 55.5 32 65.6
Lalb_Chr04g0258861 Lupinus albus HOM05D001218 ORTHO05D004088 2.0e-06 55.5 37 62.2
Os06g0326400 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 2.6e-06 55.1 39 56.4
C06p50810 Brassica napus HOM05D001218 ORTHO05D004088 3.3e-06 54.7 37 59.5
MBI17_g33116_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D011977 3.3e-06 54.7 27 77.8
Sabra02G0002000 Salix brachista HOM05D001218 ORTHO05D004088 4.4e-06 54.3 37 62.2
BolC6t40103H Brassica oleracea HOM05D001218 ORTHO05D004088 7.5e-06 53.5 37 56.8
SMO115G0046 Selaginella moellendorffii HOM05D001218 ORTHO05D004088 7.5e-06 53.5 61 45.9


User provided reference genes

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