Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.9e-73 279.3 156 100.0
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.4e-36 156.0 156 60.3
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 6.3e-29 131.3 124 61.3
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 2.4e-28 129.4 157 50.3
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 6.5e-26 121.3 143 51.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 7.7e-19 97.8 137 46.7
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.9e-18 95.9 139 45.3
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 5.0e-18 95.1 136 42.6
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 8.5e-18 94.4 136 41.9
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.1e-17 94.0 148 41.9
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-17 94.0 134 45.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.4e-17 93.6 134 44.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 3.2e-17 92.4 143 41.3
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 5.5e-17 91.7 136 45.6
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 7.2e-17 91.3 140 42.1
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 7.2e-17 91.3 142 41.5
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 7.2e-17 91.3 136 42.6
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 9.4e-17 90.9 136 43.4
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 1.2e-16 90.5 143 41.3
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.6e-16 90.1 138 44.9
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 2.1e-16 89.7 139 43.9
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.7e-16 89.4 139 42.4
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.7e-16 89.4 137 43.8
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.7e-16 89.4 137 43.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 3.6e-16 89.0 142 42.3
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 3.6e-16 89.0 138 44.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.7e-16 88.6 137 43.1
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 6.1e-16 88.2 148 43.9
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 6.1e-16 88.2 148 43.9
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.0e-16 87.8 137 42.3
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.0e-15 87.4 135 43.7
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.4e-15 87.0 141 41.1
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.8e-15 86.7 137 43.1
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.3e-15 86.3 142 41.5
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.3e-15 86.3 142 41.5
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.3e-15 86.3 137 42.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.0e-15 85.9 137 41.6
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.1e-14 84.0 137 38.0
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.1e-14 84.0 136 39.0
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.5e-14 83.6 146 37.7
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.5e-14 83.6 145 37.9
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.5e-14 83.6 146 39.7
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 2.0e-14 83.2 135 38.5
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.6e-14 82.8 135 39.3
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.6e-14 82.8 137 42.3
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-14 82.4 139 40.3
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.3e-14 82.4 134 41.0
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.4e-14 82.0 138 40.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 4.4e-14 82.0 147 36.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 4.4e-14 82.0 142 38.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 5.7e-14 81.6 141 39.0
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 5.7e-14 81.6 146 37.0
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 9.7e-14 80.9 141 38.3
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.7e-13 80.1 138 39.9
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.7e-13 80.1 138 39.9
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.7e-13 80.1 134 42.5
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.2e-13 79.7 133 39.1
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.8e-13 79.3 141 41.1
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 3.7e-13 79.0 134 44.0
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.1e-12 77.4 133 39.8
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.4e-12 77.0 141 37.6
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.1e-12 75.5 137 38.7
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.1e-12 75.5 138 37.0
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 5.3e-12 75.1 138 37.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.1e-12 74.3 137 40.9
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 9.1e-12 74.3 139 38.8
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.2e-11 73.9 144 34.7
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.5e-11 72.4 141 37.6
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.5e-11 72.4 133 39.8
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 3.5e-11 72.4 141 36.2
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.7e-10 70.1 127 37.0
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.2e-10 69.7 136 36.8
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-10 69.7 127 36.2
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.2e-10 69.7 129 39.5
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.9e-10 69.3 139 36.7
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.9e-10 69.3 146 36.3
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.8e-10 68.9 136 36.8
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.8e-10 68.9 137 38.7
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 5.0e-10 68.6 135 39.3
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 5.0e-10 68.6 138 34.8
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 6.5e-10 68.2 144 40.3
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 8.5e-10 67.8 153 35.9
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 8.5e-10 67.8 141 36.9
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 8.5e-10 67.8 127 37.0
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 8.5e-10 67.8 137 35.0
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-09 67.0 134 37.3
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.5e-09 67.0 139 37.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.5e-09 66.2 139 34.5
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 3.2e-09 65.9 139 34.5
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.2e-09 65.9 141 33.3
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.2e-09 65.9 141 33.3
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.2e-09 65.5 137 37.2
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 7.2e-09 64.7 139 36.7
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 7.2e-09 64.7 143 32.9
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.2e-08 63.9 139 35.3
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.6e-08 63.5 136 36.8
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.6e-08 63.5 135 34.8
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.6e-08 63.5 130 32.3
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.6e-08 63.5 153 34.6
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-08 63.2 138 35.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-08 63.2 138 35.5
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-08 63.2 137 37.2
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.1e-08 63.2 127 35.4
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 2.1e-08 63.2 136 39.0
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 4.7e-08 62.0 149 31.5
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 4.7e-08 62.0 136 34.6
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 4.7e-08 62.0 133 36.1
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.7e-08 62.0 133 36.1
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.7e-08 62.0 139 35.3
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 8.0e-08 61.2 141 32.6
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.0e-07 60.8 60 55.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.0e-07 60.8 137 37.2
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.4e-07 60.5 140 32.9
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.4e-07 60.5 130 36.9
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.8e-07 60.1 146 30.1
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.8e-07 60.1 145 33.1
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.8e-07 60.1 138 32.6
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.3e-07 59.7 131 35.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.0e-07 59.3 169 32.0
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 3.0e-07 59.3 133 33.1
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 5.2e-07 58.5 160 29.4
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.8e-07 57.8 131 35.1
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.2e-06 57.4 135 32.6
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 2.0e-06 56.6 147 29.9
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 2.6e-06 56.2 140 32.9
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.3e-06 55.8 125 36.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.7e-06 55.1 116 37.9
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 7.5e-06 54.7 129 34.1
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 7.5e-06 54.7 139 31.7
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 9.7e-06 54.3 136 33.1


User provided reference genes

Program Settings