Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 2.5e-65 251.9 123 100.0
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 4.5e-46 188.0 126 77.0
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 1.6e-43 179.5 116 77.6
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 7.1e-36 154.1 117 69.2
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.0e-34 150.2 118 70.3
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 5.6e-33 144.4 130 59.2
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 6.2e-32 141.0 122 64.8
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 1.1e-31 140.2 122 64.8
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 4.0e-31 138.3 121 66.9
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 5.3e-31 137.9 122 64.8
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 6.9e-31 137.5 119 63.9
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 6.9e-31 137.5 119 63.9
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 6.9e-31 137.5 122 63.9
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 9.0e-31 137.1 119 64.7
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 1.2e-30 136.7 119 63.0
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.5e-30 136.3 124 62.9
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.5e-30 136.3 120 63.3
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 2.0e-30 136.0 121 62.8
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.6e-30 135.6 121 62.0
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 3.4e-30 135.2 120 60.8
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 3.4e-30 135.2 132 59.1
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 7.6e-30 134.0 119 63.0
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 7.6e-30 134.0 119 63.0
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 7.6e-30 134.0 119 63.0
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 1.0e-29 133.7 119 62.2
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 1.0e-29 133.7 119 62.2
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 1.0e-29 133.7 119 62.2
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.7e-29 132.9 119 63.9
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 1.7e-29 132.9 119 63.0
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.7e-29 132.9 119 63.0
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.7e-29 132.9 122 63.1
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 1.7e-29 132.9 127 60.6
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.9e-29 132.1 116 60.3
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 2.9e-29 132.1 129 60.5
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 2.9e-29 132.1 126 60.3
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 2.9e-29 132.1 123 62.6
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 2.9e-29 132.1 131 57.3
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 3.8e-29 131.7 140 57.9
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 4.9e-29 131.3 120 61.7
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 4.9e-29 131.3 120 60.0
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 4.9e-29 131.3 108 63.0
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 4.9e-29 131.3 111 64.9
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 4.9e-29 131.3 118 59.3
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 6.5e-29 131.0 115 62.6
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 6.5e-29 131.0 117 62.4
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 8.4e-29 130.6 127 60.6
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 1.1e-28 130.2 113 58.4
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.1e-28 130.2 119 61.3
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 1.4e-28 129.8 116 62.9
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 2.5e-28 129.0 119 62.2
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 2.5e-28 129.0 133 59.4
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 3.2e-28 128.6 120 58.3
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.2e-28 128.6 133 58.6
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 4.2e-28 128.3 120 58.3
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 4.2e-28 128.3 117 65.0
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 4.2e-28 128.3 121 59.5
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 5.5e-28 127.9 132 57.6
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 7.1e-28 127.5 118 61.9
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 7.1e-28 127.5 161 51.6
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 9.3e-28 127.1 124 61.3
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.2e-27 126.7 161 51.6
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 1.2e-27 126.7 116 62.1
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.6e-27 126.3 123 60.2
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.6e-27 126.3 127 59.1
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.6e-27 126.3 120 59.2
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.1e-27 125.9 129 58.1
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 2.1e-27 125.9 123 56.9
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.1e-27 125.9 133 57.9
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 2.7e-27 125.6 120 60.0
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 3.5e-27 125.2 118 58.5
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 3.5e-27 125.2 126 54.8
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.0e-26 123.6 124 58.9
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.8e-26 122.9 108 61.1
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.3e-26 122.5 116 60.3
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 2.3e-26 122.5 120 61.7
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 3.0e-26 122.1 121 61.2
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 3.0e-26 122.1 118 57.6
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.0e-26 122.1 130 56.2
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 3.9e-26 121.7 117 59.8
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 3.9e-26 121.7 121 58.7
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 6.7e-26 120.9 124 59.7
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 6.7e-26 120.9 136 55.1
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 8.7e-26 120.6 117 56.4
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.1e-25 120.2 135 53.3
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 1.1e-25 120.2 124 54.0
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 1.5e-25 119.8 139 51.1
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 1.9e-25 119.4 116 57.8
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.5e-25 119.0 121 59.5
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.3e-25 118.6 112 58.9
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.3e-25 118.2 130 53.1
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 5.7e-25 117.9 143 52.4
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 7.4e-25 117.5 116 56.9
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 1.3e-24 116.7 135 53.3
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.6e-24 116.3 113 56.6
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.6e-24 116.3 117 55.6
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 2.2e-24 115.9 124 55.6
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 2.2e-24 115.9 117 59.0
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 2.2e-24 115.9 117 57.3
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 3.7e-24 115.2 132 53.0
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 3.7e-24 115.2 123 57.7
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 3.7e-24 115.2 126 55.6
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 3.7e-24 115.2 131 54.2
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 6.3e-24 114.4 131 55.0
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 6.3e-24 114.4 120 55.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 8.2e-24 114.0 123 56.9
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.4e-23 113.2 120 54.2
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 1.4e-23 113.2 122 52.5
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.8e-23 112.8 115 56.5
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.8e-23 112.8 132 52.3
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 1.8e-23 112.8 114 57.0
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 9.0e-23 110.5 123 49.6
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 1.2e-22 110.2 122 56.6
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.5e-22 109.8 148 49.3
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 2.0e-22 109.4 118 55.9
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.4e-22 108.6 131 53.4
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 4.5e-22 108.2 118 54.2
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 5.9e-22 107.8 119 55.5
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 5.9e-22 107.8 117 55.6
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 7.6e-22 107.5 131 54.2
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 2.9e-21 105.5 118 50.8
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.9e-21 105.5 116 54.3
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 5.0e-21 104.8 112 51.8
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 5.0e-21 104.8 128 53.1
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 5.0e-21 104.8 119 52.9
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 6.5e-21 104.4 94 57.4
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 1.4e-20 103.2 112 55.4
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 2.5e-20 102.4 113 54.9
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 3.2e-20 102.1 123 51.2
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 4.2e-20 101.7 134 46.3
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 5.5e-20 101.3 161 45.3
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 2.1e-19 99.4 132 48.5
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 3.6e-19 98.6 126 46.8
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 3.0e-18 95.5 134 46.3
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 5.1e-18 94.7 94 56.4
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 3.3e-17 92.0 154 40.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 3.3e-17 92.0 157 44.6
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 3.3e-17 92.0 147 44.2
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 3.3e-17 92.0 148 39.9
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 4.3e-17 91.7 142 44.4
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 7.4e-17 90.9 154 40.9
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.7e-16 89.7 142 43.7
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.7e-16 89.7 142 43.7
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 1.7e-16 89.7 146 41.8
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 1.1e-15 87.0 84 48.8
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 1.4e-15 86.7 99 52.5
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 1.8e-15 86.3 139 45.3
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 4.1e-15 85.1 123 46.3
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 2.6e-14 82.4 59 62.7
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 5.9e-14 81.3 103 51.5
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 2.5e-12 75.9 91 47.3
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 7.2e-12 74.3 75 52.0
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 5.7e-09 64.7 95 43.2
Nitab4.5_0000957g0030 Nicotiana tabacum HOM05D004757 ORTHO05D005743 1.8e-07 59.7 93 44.1
Peaxi162Scf00417g00054 Petunia axillaris HOM05D004757 ORTHO05D005743 4.1e-07 58.5 69 50.7


User provided reference genes

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