Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 1.1e-78 296.6 152 100.0
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 6.2e-74 280.8 143 100.0
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 5.0e-63 244.6 135 92.6
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 1.8e-44 183.0 144 70.1
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 1.6e-40 169.9 146 66.4
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 4.1e-33 145.2 141 61.0
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 1.4e-28 130.2 150 54.7
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 1.8e-28 129.8 147 51.0
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 2.6e-27 125.9 155 50.3
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 1.3e-26 123.6 132 56.1
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 1.7e-26 123.2 150 51.3
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 2.2e-26 122.9 150 52.7
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.2e-26 122.9 154 50.0
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 8.3e-26 120.9 154 52.6
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 8.3e-26 120.9 150 52.7
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 8.3e-26 120.9 150 52.7
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 1.1e-25 120.6 150 52.7
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 1.4e-25 120.2 150 51.3
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.4e-25 119.4 154 50.6
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.4e-25 119.4 148 49.3
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.4e-25 119.4 154 49.4
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 3.1e-25 119.0 154 51.3
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 3.1e-25 119.0 150 49.3
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 3.1e-25 119.0 150 47.3
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 4.1e-25 118.6 150 49.3
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 1.6e-24 116.7 147 50.3
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.0e-24 116.3 154 48.7
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 5.9e-24 114.8 150 46.0
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 5.9e-24 114.8 148 50.0
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 7.7e-24 114.4 148 53.4
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 7.7e-24 114.4 150 48.7
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 7.7e-24 114.4 150 50.7
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.0e-23 114.0 149 51.0
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 1.0e-23 114.0 153 49.7
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.7e-23 113.2 141 48.9
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.7e-23 113.2 151 49.7
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.9e-23 112.5 149 50.3
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 3.8e-23 112.1 150 46.7
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 3.8e-23 112.1 148 48.6
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 3.8e-23 112.1 151 46.4
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 6.5e-23 111.3 154 50.0
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 6.5e-23 111.3 147 47.6
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 8.5e-23 110.9 137 46.7
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 1.5e-22 110.2 153 45.1
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.5e-22 110.2 154 44.8
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 1.5e-22 110.2 137 46.0
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.9e-22 109.8 158 46.8
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 2.5e-22 109.4 146 47.3
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 2.5e-22 109.4 144 48.6
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 3.2e-22 109.0 151 46.4
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 5.5e-22 108.2 149 48.3
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 5.5e-22 108.2 151 47.0
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 5.5e-22 108.2 144 48.6
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 7.2e-22 107.8 151 46.4
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 7.2e-22 107.8 154 44.8
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 7.2e-22 107.8 150 45.3
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 7.2e-22 107.8 154 48.1
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 7.2e-22 107.8 154 47.4
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 9.5e-22 107.5 149 45.6
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 9.5e-22 107.5 149 45.0
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.2e-21 107.1 154 44.2
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 1.6e-21 106.7 155 48.4
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 2.1e-21 106.3 154 48.7
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 2.8e-21 105.9 154 46.8
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 3.6e-21 105.5 151 45.7
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 4.7e-21 105.1 154 43.5
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 8.0e-21 104.4 151 43.0
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.0e-20 104.0 149 43.0
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.4e-20 103.6 157 45.9
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 1.8e-20 103.2 147 46.3
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 1.8e-20 103.2 155 45.2
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 1.8e-20 103.2 143 45.5
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 2.3e-20 102.8 156 44.2
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 2.3e-20 102.8 147 44.2
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 2.3e-20 102.8 138 47.8
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 3.0e-20 102.4 174 42.0
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 4.0e-20 102.1 149 42.3
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 6.8e-20 101.3 147 45.6
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 6.8e-20 101.3 147 45.6
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 6.8e-20 101.3 153 45.1
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.2e-19 100.5 151 43.0
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.2e-19 100.5 153 44.4
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 1.5e-19 100.1 147 44.2
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 1.5e-19 100.1 147 44.2
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 1.5e-19 100.1 149 40.3
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 2.0e-19 99.8 151 42.4
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 2.0e-19 99.8 153 44.4
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.6e-19 99.4 149 40.9
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 3.4e-19 99.0 151 42.4
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 4.4e-19 98.6 148 40.5
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 4.4e-19 98.6 148 40.5
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 7.5e-19 97.8 148 45.9
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 7.5e-19 97.8 147 44.2
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 9.8e-19 97.4 151 41.7
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 9.8e-19 97.4 149 42.3
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.3e-18 97.1 138 45.7
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 1.7e-18 96.7 165 41.8
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.7e-18 96.7 148 43.9
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 1.7e-18 96.7 150 44.7
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 2.8e-18 95.9 148 39.2
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 4.9e-18 95.1 150 44.7
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 4.9e-18 95.1 151 45.0
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 6.3e-18 94.7 147 41.5
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 6.3e-18 94.7 149 45.0
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 8.3e-18 94.4 105 53.3
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 8.3e-18 94.4 149 43.6
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.1e-17 94.0 154 44.2
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 1.1e-17 94.0 151 42.4
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 1.4e-17 93.6 145 42.8
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 1.4e-17 93.6 145 42.8
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 1.4e-17 93.6 145 42.8
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.4e-17 93.6 148 38.5
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.4e-17 93.6 148 38.5
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 1.8e-17 93.2 141 44.0
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 4.1e-17 92.0 148 42.6
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 4.1e-17 92.0 145 42.8
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 4.1e-17 92.0 150 45.3
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 5.4e-17 91.7 148 43.9
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 5.4e-17 91.7 141 46.1
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 5.4e-17 91.7 157 42.0
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 3.5e-16 89.0 148 41.2
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 5.9e-16 88.2 97 53.6
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 7.8e-16 87.8 143 43.4
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 1.0e-15 87.4 144 44.4
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 1.7e-15 86.7 144 43.1
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 2.3e-15 86.3 144 40.3
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 3.8e-15 85.5 144 42.4
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 8.6e-15 84.3 147 40.8
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 1.1e-14 84.0 139 41.7
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 1.1e-14 84.0 91 51.6
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 1.9e-14 83.2 139 41.0
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 1.9e-14 83.2 139 41.7
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 1.9e-14 83.2 144 41.7
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 1.9e-14 83.2 144 40.3
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 1.9e-14 83.2 131 43.5
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 2.5e-14 82.8 95 51.6
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 2.5e-14 82.8 140 42.1
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 2.5e-14 82.8 144 40.3
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 2.5e-14 82.8 144 42.4
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 5.6e-14 81.6 95 50.5
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 9.5e-14 80.9 142 40.1
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 9.5e-14 80.9 149 40.3
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 1.2e-13 80.5 149 38.9
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 1.2e-13 80.5 139 41.7
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 1.2e-13 80.5 144 40.3
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 1.6e-13 80.1 149 39.6
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 1.6e-13 80.1 147 40.8
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 8.0e-13 77.8 149 39.6
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 8.0e-13 77.8 149 37.6
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 6.8e-12 74.7 94 44.7
FAN03G2881 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.8e-12 74.7 96 44.8
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 3.4e-11 72.4 139 38.1
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 5.7e-11 71.6 95 46.3
CSS0009268 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 7.5e-11 71.2 89 48.3
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 3.7e-10 68.9 149 37.6
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 3.2e-09 65.9 93 45.2
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 4.1e-09 65.5 163 34.4
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 9.2e-09 64.3 141 35.5
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 9.2e-09 64.3 141 35.5
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 1.6e-08 63.5 148 35.8
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 1.6e-08 63.5 75 48.0
QL01p024561 Quercus lobata HOM05D003400 ORTHO05D003687 1.6e-08 63.5 85 44.7
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 5.9e-08 61.6 138 33.3
unitig_37.g12474 Utricularia gibba HOM05D003400 ORTHO05D003687 7.8e-08 61.2 119 37.0
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 7.8e-08 61.2 139 34.5
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 2.3e-07 59.7 136 33.8
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 3.9e-07 58.9 76 46.1
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 3.9e-07 58.9 86 44.2
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 5.0e-07 58.5 68 51.5
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 3.3e-06 55.8 75 45.3
Zm00001eb209040 Zea mays HOM05D003400 ORTHO05D003687 4.3e-06 55.5 78 44.9


User provided reference genes

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