Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 1.4e-66 256.1 126 100.0
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 1.1e-12 77.0 53 77.4
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 1.5e-12 76.6 91 50.5
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 1.5e-12 76.6 92 50.0
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 2.5e-12 75.9 92 51.1
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 3.3e-12 75.5 53 75.5
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 3.3e-12 75.5 92 51.1
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 4.3e-12 75.1 56 69.6
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 5.6e-12 74.7 92 48.9
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 5.6e-12 74.7 92 48.9
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 5.6e-12 74.7 92 48.9
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 7.4e-12 74.3 90 51.1
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 9.6e-12 73.9 92 50.0
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 9.6e-12 73.9 52 75.0
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 9.6e-12 73.9 92 50.0
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 9.6e-12 73.9 90 51.1
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 1.3e-11 73.6 92 47.8
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 1.3e-11 73.6 92 48.9
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 1.3e-11 73.6 51 76.5
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 1.3e-11 73.6 53 73.6
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 1.6e-11 73.2 56 67.9
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 1.6e-11 73.2 53 73.6
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 1.6e-11 73.2 92 48.9
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 1.6e-11 73.2 92 47.8
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 2.1e-11 72.8 92 48.9
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 2.1e-11 72.8 92 48.9
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 2.1e-11 72.8 90 50.0
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 2.1e-11 72.8 91 48.4
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 2.1e-11 72.8 92 47.8
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.1e-11 72.8 91 48.4
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 2.1e-11 72.8 92 47.8
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 2.1e-11 72.8 92 47.8
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 2.1e-11 72.8 92 47.8
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 2.8e-11 72.4 53 71.7
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 2.8e-11 72.4 90 48.9
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 2.8e-11 72.4 53 71.7
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 2.8e-11 72.4 89 48.3
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 2.8e-11 72.4 53 71.7
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 2.8e-11 72.4 53 71.7
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 3.6e-11 72.0 53 71.7
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 3.6e-11 72.0 51 74.5
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 3.6e-11 72.0 53 71.7
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 3.6e-11 72.0 92 47.8
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 3.6e-11 72.0 53 71.7
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 3.6e-11 72.0 53 71.7
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 3.6e-11 72.0 53 71.7
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 3.6e-11 72.0 92 47.8
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 3.6e-11 72.0 90 47.8
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 4.8e-11 71.6 53 71.7
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 4.8e-11 71.6 53 71.7
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 4.8e-11 71.6 53 71.7
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 4.8e-11 71.6 53 71.7
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 4.8e-11 71.6 53 71.7
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 4.8e-11 71.6 53 69.8
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 6.2e-11 71.2 91 47.3
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 6.2e-11 71.2 53 71.7
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 6.2e-11 71.2 55 67.3
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 6.2e-11 71.2 53 69.8
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 6.2e-11 71.2 53 69.8
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 8.1e-11 70.9 90 48.9
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 8.1e-11 70.9 51 72.5
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 1.1e-10 70.5 53 67.9
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 1.1e-10 70.5 53 67.9
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 1.1e-10 70.5 53 69.8
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 1.1e-10 70.5 53 69.8
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 1.1e-10 70.5 53 69.8
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 1.1e-10 70.5 53 69.8
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 1.1e-10 70.5 53 69.8
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 1.1e-10 70.5 51 72.5
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 1.4e-10 70.1 51 70.6
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 1.4e-10 70.1 51 70.6
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 1.4e-10 70.1 51 72.5
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 1.8e-10 69.7 53 67.9
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 1.8e-10 69.7 53 67.9
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 1.8e-10 69.7 53 69.8
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 1.8e-10 69.7 53 69.8
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 2.4e-10 69.3 90 48.9
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 2.4e-10 69.3 50 74.0
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 3.1e-10 68.9 55 69.1
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 4.0e-10 68.6 53 67.9
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 5.3e-10 68.2 51 70.6
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 5.3e-10 68.2 53 64.2
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 5.3e-10 68.2 53 64.2
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 9.0e-10 67.4 53 69.8
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 1.2e-09 67.0 51 68.6
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 1.5e-09 66.6 51 68.6
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.0e-09 66.2 88 43.2
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 7.6e-09 64.3 53 62.3
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 1.3e-08 63.5 48 68.8
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.7e-08 63.2 51 64.7
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 3.5e-06 55.5 90 37.8
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 7.9e-06 54.3 51 58.8


User provided reference genes

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