Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 0.0e+00 1436.8 733 100.0
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 3.6e-159 566.2 875 47.1
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 3.0e-89 334.0 745 39.7
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 2.1e-50 204.9 740 32.7
ECA238G4706 Erigeron canadensis HOM05D029832 ORTHO05D007753 3.4e-40 171.0 786 30.3
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 2.1e-34 151.8 1140 25.9
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 5.2e-33 147.1 631 28.2
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 2.4e-22 111.7 983 24.6
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 7.0e-22 110.2 446 30.0
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 2.7e-21 108.2 1170 24.4
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-17 95.9 261 36.0
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 5.4e-14 84.0 383 27.9
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 7.0e-14 83.6 866 24.5
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 7.0e-14 83.6 329 27.1
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 9.2e-14 83.2 370 28.9
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 1.2e-13 82.8 237 33.8
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.3e-12 78.6 235 32.3
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 5.1e-12 77.4 532 25.0
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 5.1e-12 77.4 293 30.4
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 1.1e-11 76.3 349 26.4
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.1e-11 76.3 817 26.3
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 1.5e-11 75.9 779 25.8
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 1.9e-11 75.5 660 23.9
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 3.3e-11 74.7 576 25.9
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 5.6e-11 73.9 207 31.9
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 5.6e-11 73.9 370 27.6
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 5.6e-11 73.9 260 31.9
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 7.3e-11 73.6 785 24.6
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 1.2e-10 72.8 304 27.0
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.1e-10 72.0 276 30.4
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 2.8e-10 71.6 328 28.7
C09p42010 Brassica napus HOM05D008661 ORTHO05D010872 3.6e-10 71.2 387 26.1
BolC9t57083H Brassica oleracea HOM05D008661 ORTHO05D010872 3.6e-10 71.2 387 26.1
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.6e-10 71.2 325 28.3
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 6.2e-10 70.5 601 23.8
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 6.2e-10 70.5 601 23.8
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 6.2e-10 70.5 276 30.8
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.1e-09 69.7 276 30.8
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.1e-09 69.7 328 26.8
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.1e-09 69.7 324 28.7
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 1.8e-09 68.9 262 30.2
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 1.8e-09 68.9 1077 22.5
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 1.8e-09 68.9 552 25.4
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 2.3e-09 68.6 474 26.4
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 2.3e-09 68.6 233 29.6
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.3e-09 68.6 596 25.3
C09p42020 Brassica napus HOM05D008661 ORTHO05D010872 4.0e-09 67.8 388 25.0
BolC9t57085H Brassica oleracea HOM05D008661 ORTHO05D010872 4.0e-09 67.8 388 25.0
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 5.2e-09 67.4 476 26.7
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 5.2e-09 67.4 476 26.7
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 5.2e-09 67.4 387 25.1
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 5.2e-09 67.4 537 25.0
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 8.9e-09 66.6 254 31.5
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 8.9e-09 66.6 349 27.8
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.2e-08 66.2 233 31.3
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.2e-08 66.2 558 24.6
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 2.0e-08 65.5 404 29.5
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 4.4e-08 64.3 226 31.9
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 5.8e-08 63.9 760 26.7
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 7.5e-08 63.5 764 25.9
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 7.5e-08 63.5 711 25.6
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 9.9e-08 63.2 765 26.0
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 9.9e-08 63.2 373 25.7
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 2.9e-07 61.6 222 27.9
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 3.7e-07 61.2 769 25.7
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 3.7e-07 61.2 769 25.7
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 3.7e-07 61.2 260 28.8
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 3.7e-07 61.2 503 26.4
BcaC04g20566 Brassica carinata HOM05D008661 ORTHO05D010872 4.9e-07 60.8 571 24.2
A10p10120 Brassica napus HOM05D008661 ORTHO05D010872 4.9e-07 60.8 395 24.8
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 4.9e-07 60.8 277 27.8
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 4.9e-07 60.8 543 26.0
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 4.9e-07 60.8 954 22.5
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 6.4e-07 60.5 309 28.2
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 6.4e-07 60.5 265 27.9
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 8.3e-07 60.1 490 25.9
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 8.3e-07 60.1 450 24.9
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.1e-06 59.7 224 33.9
BcaC04g20572 Brassica carinata HOM05D008661 ORTHO05D010872 1.1e-06 59.7 740 23.4
BraA10t43092Z Brassica rapa HOM05D008661 ORTHO05D010872 1.4e-06 59.3 390 24.9
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 1.4e-06 59.3 756 22.6
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.4e-06 59.3 327 25.4
BcaC04g20573 Brassica carinata HOM05D008661 ORTHO05D010872 1.9e-06 58.9 682 23.2
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 2.4e-06 58.5 227 30.8
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.1e-06 57.8 330 28.8
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 4.1e-06 57.8 309 25.9
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 5.4e-06 57.4 555 25.0
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 7.1e-06 57.0 777 23.9
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 7.1e-06 57.0 758 23.4
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 9.2e-06 56.6 263 29.3
BcaB08g35607 Brassica carinata HOM05D008661 ORTHO05D010872 9.2e-06 56.6 734 23.8


User provided reference genes

Program Settings