Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 4.8e-112 407.9 214 100.0
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 2.2e-72 276.2 222 70.3
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 1.0e-66 257.3 215 69.8
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 1.6e-62 243.4 135 92.6
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 1.6e-62 243.4 135 92.6
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 5.9e-54 214.9 215 60.9
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 1.5e-52 210.3 230 59.1
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 2.5e-52 209.5 230 57.4
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 1.6e-51 206.8 230 57.0
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 1.6e-51 206.8 230 56.5
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 2.7e-51 206.1 233 56.2
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 3.6e-51 205.7 208 56.7
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 6.1e-51 204.9 228 54.8
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 8.0e-51 204.5 193 63.2
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 1.4e-50 203.8 230 56.5
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 1.8e-50 203.4 230 56.5
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 2.3e-50 203.0 230 56.1
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 7.5e-49 198.0 223 57.4
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 2.2e-48 196.4 209 56.9
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.8e-48 196.1 213 59.2
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 4.9e-48 195.3 212 57.1
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 4.9e-48 195.3 223 55.6
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 5.4e-47 191.8 224 54.9
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 2.0e-46 189.9 214 56.1
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 2.0e-46 189.9 214 54.7
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.7e-46 189.5 227 54.2
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 5.9e-46 188.3 208 55.8
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.0e-45 187.6 210 56.7
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 1.0e-45 187.6 209 55.0
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 1.0e-45 187.6 212 56.1
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.3e-45 187.2 207 56.0
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 1.7e-45 186.8 230 49.6
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.1e-44 184.1 212 55.7
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 1.5e-44 183.7 219 52.5
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.5e-44 183.0 224 52.7
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 4.3e-44 182.2 208 54.3
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 5.6e-44 181.8 208 54.3
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 5.6e-44 181.8 207 53.6
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 5.6e-44 181.8 212 53.8
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 1.2e-43 180.6 212 52.8
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 2.1e-43 179.9 208 53.4
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 2.1e-43 179.9 213 53.5
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 2.8e-43 179.5 226 50.4
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 4.7e-43 178.7 215 54.0
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 8.0e-43 177.9 209 52.2
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.0e-42 177.6 214 53.3
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.0e-42 177.6 209 52.2
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 1.4e-42 177.2 214 53.3
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 1.4e-42 177.2 224 49.6
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 4.0e-42 175.6 223 48.9
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 4.0e-42 175.6 209 51.7
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 4.0e-42 175.6 212 51.9
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 6.8e-42 174.9 228 51.3
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 6.8e-42 174.9 219 49.8
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 8.9e-42 174.5 209 51.2
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.5e-41 173.7 205 52.2
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 2.0e-41 173.3 223 48.4
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 2.6e-41 172.9 209 50.7
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 2.6e-41 172.9 220 47.7
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 5.7e-41 171.8 227 50.2
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 7.5e-41 171.4 202 53.0
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 7.5e-41 171.4 232 48.7
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 7.5e-41 171.4 219 53.0
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 9.8e-41 171.0 208 51.0
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 2.9e-40 169.5 207 49.8
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 2.9e-40 169.5 213 52.1
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 3.7e-40 169.1 208 50.5
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 4.9e-40 168.7 225 50.7
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 6.4e-40 168.3 236 47.5
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 8.3e-40 167.9 220 51.4
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 8.3e-40 167.9 201 51.2
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.4e-39 167.2 197 51.3
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.4e-39 166.4 208 49.5
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 2.4e-39 166.4 208 53.4
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 2.4e-39 166.4 215 46.5
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 3.2e-39 166.0 242 47.5
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 5.4e-39 165.2 201 52.2
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 9.2e-39 164.5 201 52.7
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 2.0e-38 163.3 220 50.0
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 2.7e-38 162.9 202 53.5
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 2.7e-38 162.9 216 51.9
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 2.7e-38 162.9 209 51.7
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 2.7e-38 162.9 226 49.6
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 5.9e-38 161.8 216 46.3
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 7.8e-38 161.4 207 48.8
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 1.0e-37 161.0 155 61.3
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 1.3e-37 160.6 202 50.0
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 1.7e-37 160.2 216 45.8
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 1.7e-37 160.2 202 51.0
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 2.3e-37 159.8 199 53.8
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 3.0e-37 159.5 249 44.2
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 3.0e-37 159.5 216 51.4
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 3.9e-37 159.1 209 51.2
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 3.9e-37 159.1 223 49.3
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 5.0e-37 158.7 198 51.0
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 6.6e-37 158.3 220 48.2
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 1.9e-36 156.8 202 49.5
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 3.3e-36 156.0 231 42.4
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.6e-35 153.7 215 45.6
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.6e-35 153.7 215 45.6
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 1.6e-35 153.7 202 49.0
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 2.1e-35 153.3 186 53.8
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 8.0e-35 151.4 219 47.5
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 1.0e-34 151.0 192 49.0
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 1.0e-34 151.0 215 44.7
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.4e-34 150.6 216 49.1
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.3e-34 149.8 173 50.9
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 5.2e-34 148.7 215 44.2
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 5.2e-34 148.7 215 44.2
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 8.9e-34 147.9 226 46.0
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 8.9e-34 147.9 205 44.9
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 1.2e-33 147.5 213 46.9
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 1.2e-33 147.5 205 48.8
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 3.4e-33 146.0 218 43.6
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 4.4e-33 145.6 230 43.9
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 5.8e-33 145.2 190 47.9
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 5.8e-33 145.2 222 47.3
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 9.8e-33 144.4 226 45.6
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 1.3e-32 144.1 209 45.9
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.3e-32 144.1 181 49.7
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 2.2e-32 143.3 190 47.4
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 2.2e-32 143.3 190 46.8
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 2.2e-32 143.3 190 47.4
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 2.2e-32 143.3 190 46.8
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 3.7e-32 142.5 206 43.2
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 8.3e-32 141.4 210 46.7
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 1.9e-31 140.2 206 44.7
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 4.1e-31 139.0 194 45.4
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 4.1e-31 139.0 189 46.0
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 5.4e-31 138.7 224 40.6
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 7.0e-31 138.3 189 46.0
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 4.6e-30 135.6 155 54.2
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 6.0e-30 135.2 148 58.8
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 1.7e-29 133.7 200 44.5
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 2.3e-29 133.3 206 42.2
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 3.0e-29 132.9 218 45.0
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 1.5e-28 130.6 174 46.6
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 4.3e-28 129.0 195 46.2
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 7.3e-28 128.3 206 45.1
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 1.1e-26 124.4 207 43.0
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 1.4e-26 124.0 175 47.4
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 3.1e-26 122.9 175 46.9
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 4.0e-26 122.5 207 43.0
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 6.8e-26 121.7 197 42.6
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 6.8e-26 121.7 207 42.5
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 1.2e-25 120.9 211 39.3
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 2.6e-25 119.8 197 42.1
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 5.8e-25 118.6 197 41.1
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.3e-24 117.5 207 42.0
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 4.9e-24 115.5 138 51.4
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.9e-23 113.6 207 41.1
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 2.4e-23 113.2 207 39.1
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 4.1e-23 112.5 199 39.2
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 1.2e-22 110.9 183 42.6
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 8.6e-21 104.8 210 40.5
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 1.5e-20 104.0 218 38.1
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 9.5e-20 101.3 195 41.5
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 6.2e-19 98.6 215 36.7
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 6.2e-19 98.6 215 36.3
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 1.1e-18 97.8 190 38.9
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 4.0e-18 95.9 206 38.3
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 4.0e-18 95.9 215 35.8
Zm00001eb209040 Zea mays HOM05D003400 ORTHO05D003687 1.2e-17 94.4 143 45.5
unitig_37.g12474 Utricularia gibba HOM05D003400 ORTHO05D003687 5.8e-17 92.0 148 45.3
QL01p024561 Quercus lobata HOM05D003400 ORTHO05D003687 3.8e-16 89.4 134 45.5
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 4.9e-16 89.0 128 46.1
FAN03G2881 Fragaria x ananassa HOM05D003400 ORTHO05D003687 4.1e-15 85.9 96 49.0
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 5.4e-15 85.5 130 46.9
ATR1127G045 Amborella trichopoda HOM05D003400 ORTHO05D003687 1.6e-14 84.0 108 51.9
CSS0009268 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 3.0e-13 79.7 89 51.7
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 1.5e-12 77.4 118 41.5
BcaB06g29161 Brassica carinata HOM05D003400 ORTHO05D003687 3.6e-11 72.8 162 37.0
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 3.6e-11 72.8 93 47.3
Potri.013G157700 Populus trichocarpa HOM05D003400 ORTHO05D003687 8.1e-11 71.6 131 41.2
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 3.1e-10 69.7 161 34.2
Actinidia33868 Actinidia chinensis HOM05D003400 ORTHO05D003687 3.4e-09 66.2 60 66.7
Haze_24472 Corylus avellana HOM05D003400 ORTHO05D003687 1.3e-08 64.3 155 36.8
Pp3c27_4350 Physcomitrium patens HOM05D027247 ORTHO05D003687 1.4e-07 60.8 148 33.8
Oeu006055.1 Olea europaea HOM05D003400 ORTHO05D003687 2.4e-07 60.1 127 37.0
Sc14g0005640 Simmondsia chinensis HOM05D003400 ORTHO05D003687 2.4e-07 60.1 62 56.5
unitig_46.g18749 Utricularia gibba HOM05D003400 ORTHO05D003687 2.7e-06 56.6 95 38.9
SMO364G0282 Selaginella moellendorffii HOM05D003400 ORTHO05D003687 3.5e-06 56.2 193 32.1


User provided reference genes

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