Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0250661 Helianthus annuus HOM05D003372 ORTHO05D021692 2.0e-43 178.7 90 100.0
HanXRQChr14g0460791 Helianthus annuus HOM05D003372 ORTHO05D004539 2.3e-31 138.7 80 92.5
Lsat_1_v5_gn_9_109300 Lactuca sativa HOM05D003372 ORTHO05D004539 9.5e-22 106.7 88 68.2
HanXRQChr08g0216551 Helianthus annuus HOM05D003372 ORTHO05D004539 1.1e-20 103.2 88 70.5
Lsat_1_v5_gn_3_8461 Lactuca sativa HOM05D003372 ORTHO05D004539 2.2e-18 95.5 64 75.0
Lsat_1_v5_gn_7_89801 Lactuca sativa HOM05D003372 ORTHO05D004539 6.4e-18 94.0 90 58.9
Manes.15G147700 Manihot esculenta HOM05D003372 ORTHO05D004539 8.4e-18 93.6 59 76.3
Os03g0731900 Oryza sativa ssp. japonica HOM05D003372 ORTHO05D004539 1.4e-17 92.8 79 62.0
Rhsim11G0173000 Rhododendron simsii HOM05D003372 ORTHO05D004539 2.4e-17 92.0 63 69.8
Dinv23560 Davidia involucrata HOM05D003372 ORTHO05D004539 3.2e-17 91.7 71 67.6
AL7G16920 Arabidopsis lyrata HOM05D003372 ORTHO05D004539 4.2e-17 91.3 62 72.6
THA.LOC104819599 Tarenaya hassleriana HOM05D003372 ORTHO05D004539 4.2e-17 91.3 62 72.6
Haze_02422 Corylus avellana HOM05D003372 ORTHO05D004539 5.4e-17 90.9 89 59.6
MBI16_g10983_MAGBIO Magnolia biondii HOM05D003372 ORTHO05D004539 7.1e-17 90.5 76 64.5
AT4G34350 Arabidopsis thaliana HOM05D003372 ORTHO05D004539 1.2e-16 89.7 62 72.6
Manes.17G098700 Manihot esculenta HOM05D003372 ORTHO05D004539 1.2e-16 89.7 62 71.0
CARHR242430 Cardamine hirsuta HOM05D003372 ORTHO05D004539 2.7e-16 88.6 62 71.0
Oeu021891.1 Olea europaea HOM05D003372 ORTHO05D004539 2.7e-16 88.6 62 66.1
BraA08t33655Z Brassica rapa HOM05D003372 ORTHO05D004539 3.5e-16 88.2 62 69.4
Lsat_1_v5_gn_7_89821 Lactuca sativa HOM05D003372 ORTHO05D004539 3.5e-16 88.2 87 57.5
Hma1.2p1_0584F.1_g183510 Hydrangea macrophylla HOM05D003372 ORTHO05D004539 4.6e-16 87.8 71 64.8
Sp7g32140 Schrenkiella parvula HOM05D003372 ORTHO05D004539 4.6e-16 87.8 62 69.4
QL11p040128 Quercus lobata HOM05D003372 ORTHO05D004539 6.0e-16 87.4 90 56.7
Nn5g29484 Nelumbo nucifera HOM05D003372 ORTHO05D004539 7.8e-16 87.0 63 65.1
TAR628G0478 Trochodendron aralioides HOM05D003372 ORTHO05D004539 7.8e-16 87.0 63 65.1
A08p16910 Brassica napus HOM05D003372 ORTHO05D004539 1.0e-15 86.7 70 64.3
C03p85850 Brassica napus HOM05D003372 ORTHO05D004539 1.0e-15 86.7 73 63.0
Thhalv10025124m.g Eutrema salsugineum HOM05D003372 ORTHO05D004539 1.3e-15 86.3 62 67.7
Oeu027591.1 Olea europaea HOM05D003372 ORTHO05D004539 1.3e-15 86.3 71 60.6
Carub.0007s0598 Capsella rubella HOM05D003372 ORTHO05D004539 3.0e-15 85.1 62 69.4
BcaB01g01634 Brassica carinata HOM05D003372 ORTHO05D021692 5.1e-15 84.3 80 61.2
SGA_v2.0_scaffold32G13142 Striga asiatica HOM05D003372 ORTHO05D004539 5.1e-15 84.3 62 67.7
THA.LOC104804358 Tarenaya hassleriana HOM05D003372 ORTHO05D004539 5.1e-15 84.3 78 59.0
BcaB03g11839 Brassica carinata HOM05D003372 ORTHO05D004539 6.6e-15 84.0 70 62.9
MELO3C018407.2 Cucumis melo HOM05D003372 ORTHO05D004539 6.6e-15 84.0 89 55.1
Hund29766 Selenicereus undatus HOM05D003372 ORTHO05D004539 6.6e-15 84.0 62 67.7
Hund29768 Selenicereus undatus HOM05D003372 ORTHO05D004539 6.6e-15 84.0 62 67.7
ECA236G0098 Erigeron canadensis HOM05D003372 ORTHO05D004539 8.7e-15 83.6 90 56.7
ECA240G3281 Erigeron canadensis HOM05D003372 ORTHO05D004539 1.1e-14 83.2 87 59.8
Cfa004972 Carpinus fangiana HOM05D003372 ORTHO05D004539 1.5e-14 82.8 89 58.4
CiPaw.05G060700 Carya illinoinensis HOM05D003372 ORTHO05D004539 1.5e-14 82.8 89 58.4
DCAR_022093 Daucus carota HOM05D003372 ORTHO05D004539 1.5e-14 82.8 63 65.1
Duzib052G0241 Durio zibethinus HOM05D003372 ORTHO05D004539 1.5e-14 82.8 62 66.1
SalBow6G6275 Salvia bowleyana HOM05D003372 ORTHO05D004539 1.5e-14 82.8 74 60.8
Aa31LG2G16230 Aethionema arabicum HOM05D003372 ORTHO05D004539 1.9e-14 82.4 71 60.6
BcaNung06043 Brassica carinata HOM05D003372 ORTHO05D021692 1.9e-14 82.4 62 66.1
C01p04450 Brassica napus HOM05D003372 ORTHO05D004539 1.9e-14 82.4 62 66.1
Migut.B00274 Erythranthe guttata HOM05D003372 ORTHO05D004539 1.9e-14 82.4 62 67.7
Actinidia00496 Actinidia chinensis HOM05D003372 ORTHO05D004539 3.3e-14 81.6 72 62.5
Potri.009G111569 Populus trichocarpa HOM05D003372 ORTHO05D004539 3.3e-14 81.6 86 58.1
Potri.T124604 Populus trichocarpa HOM05D003372 ORTHO05D004539 3.3e-14 81.6 86 58.1
SGA_v2.0_scaffold58G20576 Striga asiatica HOM05D003372 ORTHO05D004539 3.3e-14 81.6 86 57.0
Thecc.02G121400 Theobroma cacao HOM05D003372 ORTHO05D004539 3.3e-14 81.6 62 67.7
COL.COLO4_32468 Corchorus olitorius HOM05D003372 ORTHO05D004539 4.3e-14 81.3 63 69.8
Lj5C201T11 Lonicera japonica HOM05D003372 ORTHO05D004539 4.3e-14 81.3 85 54.1
Ciclev10028384m.g Citrus clementina HOM05D003372 ORTHO05D004539 7.3e-14 80.5 62 64.5
Glyma.11G120900 Glycine max HOM05D003372 ORTHO05D004539 9.6e-14 80.1 74 62.2
Gohir.D12G018700 Gossypium hirsutum HOM05D003372 ORTHO05D004539 1.2e-13 79.7 62 66.1
Gorai.008G019000 Gossypium raimondii HOM05D003372 ORTHO05D004539 1.2e-13 79.7 62 66.1
Zm00001eb056240 Zea mays HOM05D003372 ORTHO05D004539 1.2e-13 79.7 76 59.2
Aqoxy5G01718 Aquilegia oxysepala HOM05D003372 ORTHO05D004539 1.6e-13 79.3 65 64.6
ClCG02G005330 Citrullus lanatus HOM05D003372 ORTHO05D004539 1.6e-13 79.3 89 51.7
Glyma.12G046000 Glycine max HOM05D003372 ORTHO05D004539 2.1e-13 79.0 63 69.8
Gohir.D02G203028 Gossypium hirsutum HOM05D003372 ORTHO05D004539 2.1e-13 79.0 62 66.1
Lalb_Chr19g0138541 Lupinus albus HOM05D003372 ORTHO05D004539 2.1e-13 79.0 63 68.3
Sabra09G0085200 Salix brachista HOM05D003372 ORTHO05D004539 2.1e-13 79.0 62 66.1
Duzib132G0112 Durio zibethinus HOM05D003372 ORTHO05D004539 2.8e-13 78.6 62 66.1
Gorai.005G229100 Gossypium raimondii HOM05D003372 ORTHO05D004539 2.8e-13 78.6 62 66.1
Phvul.011G047900 Phaseolus vulgaris HOM05D003372 ORTHO05D004539 2.8e-13 78.6 63 63.5
Sc08g0000280 Simmondsia chinensis HOM05D003372 ORTHO05D004539 2.8e-13 78.6 65 60.0
FvH4_2g07930 Fragaria vesca HOM05D003372 ORTHO05D004539 4.7e-13 77.8 62 64.5
FAN24G2951 Fragaria x ananassa HOM05D003372 ORTHO05D004539 4.7e-13 77.8 62 64.5
Cpa.g.sc62.104 Carica papaya HOM05D003372 ORTHO05D004539 6.2e-13 77.4 64 64.1
HPP92_007695 Vanilla planifolia HOM05D003372 ORTHO05D004539 6.2e-13 77.4 74 56.8
GSVIVG01015676001 Vitis vinifera HOM05D000723 ORTHO05D001760 6.2e-13 77.4 49 73.5
Gohir.A03G180200 Gossypium hirsutum HOM05D003372 ORTHO05D004539 1.1e-12 76.6 62 64.5
Atru.chr5.2925 Acer truncatum HOM05D003372 ORTHO05D004539 1.4e-12 76.3 62 62.9
Migut.B00272 Erythranthe guttata HOM05D003372 ORTHO05D004539 1.8e-12 75.9 65 60.0
Lalb_Chr03g0025841 Lupinus albus HOM05D003372 ORTHO05D004539 1.8e-12 75.9 63 63.5
Lalb_Chr01g0002771 Lupinus albus HOM05D003372 ORTHO05D004539 2.4e-12 75.5 63 61.9
MD05G1071900 Malus domestica HOM05D003372 ORTHO05D004539 2.4e-12 75.5 71 60.6
GSVIVG01003497001 Vitis vinifera HOM05D003372 ORTHO05D021692 2.4e-12 75.5 49 73.5
CANSAT25G3185 Cannabis sativa HOM05D003372 ORTHO05D004539 3.1e-12 75.1 72 58.3
VMungo1127G0238 Vigna mungo HOM05D003372 ORTHO05D004539 3.1e-12 75.1 63 60.3
A01p04090 Brassica napus HOM05D003372 ORTHO05D004539 4.0e-12 74.7 58 67.2
BraA01t00397Z Brassica rapa HOM05D003372 ORTHO05D004539 4.0e-12 74.7 58 67.2
Potri.004G150400 Populus trichocarpa HOM05D003372 ORTHO05D004539 4.0e-12 74.7 86 55.8
GSVIVG01003494001 Vitis vinifera HOM05D000231 ORTHO05D000132 5.3e-12 74.3 49 71.4
Ciclev10029878m.g Citrus clementina HOM05D003372 ORTHO05D004539 6.9e-12 73.9 60 58.3
Eucgr.C00644 Eucalyptus grandis HOM05D003372 ORTHO05D004539 6.9e-12 73.9 71 60.6
Gohir.A12G018100 Gossypium hirsutum HOM05D003372 ORTHO05D004539 6.9e-12 73.9 62 62.9
EL10Ac9g21764 Beta vulgaris HOM05D003372 ORTHO05D004539 9.0e-12 73.6 69 60.9
FAN15G2510 Fragaria x ananassa HOM05D003372 ORTHO05D004539 9.0e-12 73.6 62 59.7
FAN20G1903 Fragaria x ananassa HOM05D003372 ORTHO05D004539 9.0e-12 73.6 62 59.7
FAN27G0530 Fragaria x ananassa HOM05D003372 ORTHO05D004539 9.0e-12 73.6 62 59.7
Gohir.A13G048200 Gossypium hirsutum HOM05D003372 ORTHO05D004539 9.0e-12 73.6 63 60.3
Gohir.D13G046600 Gossypium hirsutum HOM05D003372 ORTHO05D004539 9.0e-12 73.6 62 61.3
Gorai.013G052300 Gossypium raimondii HOM05D003372 ORTHO05D004539 9.0e-12 73.6 62 61.3
vmacro02147 Vaccinium macrocarpon HOM05D003372 ORTHO05D004539 9.0e-12 73.6 64 59.4
PGR042G2159 Punica granatum HOM05D003372 ORTHO05D004539 1.2e-11 73.2 65 60.0
Hund06217 Selenicereus undatus HOM05D003372 ORTHO05D004539 1.2e-11 73.2 71 57.7
Dinv42096 Davidia involucrata HOM05D003372 ORTHO05D004539 1.5e-11 72.8 85 54.1
RcHm_v2.0_Chr6g0262391 Rosa chinensis HOM05D003372 ORTHO05D004539 1.5e-11 72.8 62 62.9
Ca_20842_v3 Cicer arietinum L. HOM05D003372 ORTHO05D004539 2.0e-11 72.4 72 58.3
Psat7g185320 Pisum sativum HOM05D003372 ORTHO05D004539 2.6e-11 72.0 61 63.9
MSTRG.16789 Avicennia marina HOM05D003372 ORTHO05D004539 3.4e-11 71.6 73 54.8
Nitab4.5_0004280g0070 Nicotiana tabacum HOM05D003372 ORTHO05D004539 3.4e-11 71.6 58 63.8
Ah.01g019670 Amaranthus hybridus HOM05D003372 ORTHO05D004539 4.4e-11 71.2 78 52.6
CsaV3_7G010240 Cucumis sativus L. HOM05D003372 ORTHO05D004539 4.4e-11 71.2 92 47.8
BolC1t00430H Brassica oleracea HOM05D003372 ORTHO05D021692 5.8e-11 70.9 52 67.3
Eucgr.I01241 Eucalyptus grandis HOM05D003372 ORTHO05D004539 5.8e-11 70.9 70 60.0
Medtr4g069030 Medicago truncatula HOM05D003372 ORTHO05D004539 9.9e-11 70.1 71 52.1
Peaxi162Scf00016g01127 Petunia axillaris HOM05D003372 ORTHO05D004539 9.9e-11 70.1 73 54.8
PGSC0003DMG400025165 Solanum tuberosum HOM05D003372 ORTHO05D004539 9.9e-11 70.1 57 64.9
TWI31G0489 Tripterygium wilfordii HOM05D003372 ORTHO05D004539 9.9e-11 70.1 69 55.1
TWI79G0015 Tripterygium wilfordii HOM05D003372 ORTHO05D004539 9.9e-11 70.1 86 50.0
unitig_0.g68 Utricularia gibba HOM05D003372 ORTHO05D021692 9.9e-11 70.1 72 59.7
CAN.G1665.7 Capsicum annuum HOM05D003372 ORTHO05D004539 1.3e-10 69.7 57 63.2
CDE02G0624 Ceratophyllum demersum HOM05D003372 ORTHO05D004539 1.3e-10 69.7 87 51.7
MD10G1082800 Malus domestica HOM05D003372 ORTHO05D004539 1.3e-10 69.7 71 57.7
Ciclev10028381m.g Citrus clementina HOM05D003372 ORTHO05D004539 1.7e-10 69.3 62 56.5
Ciclev10028350m.g Citrus clementina HOM05D003372 ORTHO05D004539 2.2e-10 68.9 62 54.8
Nitab4.5_0004287g0090 Nicotiana tabacum HOM05D003372 ORTHO05D004539 2.2e-10 68.9 58 60.3
MSTRG.5388 Avicennia marina HOM05D003372 ORTHO05D004539 3.8e-10 68.2 85 44.7
Rhsim11G0172900 Rhododendron simsii HOM05D003372 ORTHO05D004539 3.8e-10 68.2 59 57.6
TPR.G28053 Trifolium pratense HOM05D003372 ORTHO05D004539 3.8e-10 68.2 62 59.7
CDE01G0637 Ceratophyllum demersum HOM05D003372 ORTHO05D004539 6.4e-10 67.4 64 57.8
CsaV3_2G014440 Cucumis sativus L. HOM05D003372 ORTHO05D004539 6.4e-10 67.4 63 50.8
ATR0733G156 Amborella trichopoda HOM05D003372 ORTHO05D004539 8.4e-10 67.0 64 53.1
SalBow6G0842 Salvia bowleyana HOM05D003372 ORTHO05D004539 8.4e-10 67.0 73 50.7
Sed0014801 Sechium edule HOM05D003372 ORTHO05D004539 8.4e-10 67.0 94 46.8
Solyc01g109300.3 Solanum lycopersicum HOM05D003372 ORTHO05D004539 8.4e-10 67.0 72 56.9
Sopen01g051490 Solanum pennellii HOM05D003372 ORTHO05D004539 8.4e-10 67.0 72 56.9
Lj3g0010099 Lotus japonicus HOM05D003372 ORTHO05D004539 1.4e-09 66.2 64 59.4
MELO3C021949.2 Cucumis melo HOM05D003372 ORTHO05D004539 1.9e-09 65.9 63 49.2
SEGI_04933 Sequoiadendron giganteum HOM05D003372 ORTHO05D004539 1.9e-09 65.9 58 62.1
SEGI_11258 Sequoiadendron giganteum HOM05D003372 ORTHO05D004539 1.9e-09 65.9 58 62.1
Oeu010563.1 Olea europaea HOM05D003372 ORTHO05D004539 3.2e-09 65.1 59 59.3
ClCG00G005230 Citrullus lanatus HOM05D003372 ORTHO05D004539 9.3e-09 63.5 62 48.4
ClCG09G017830 Citrullus lanatus HOM05D003372 ORTHO05D004539 9.3e-09 63.5 62 48.4
Psat7g185200 Pisum sativum HOM05D003372 ORTHO05D004539 9.3e-09 63.5 71 53.5
Medtr4g069070 Medicago truncatula HOM05D003372 ORTHO05D004539 1.6e-08 62.8 71 49.3
HanXRQChr16g0505021 Helianthus annuus HOM05D003372 ORTHO05D004539 2.1e-08 62.4 87 48.3
PSO170G0120 Papaver somniferum HOM05D003372 ORTHO05D004539 2.1e-08 62.4 64 57.8
PSO700G0135 Papaver somniferum HOM05D003372 ORTHO05D004539 2.1e-08 62.4 64 57.8
SMO367G0888 Selaginella moellendorffii HOM05D003372 ORTHO05D004539 2.1e-08 62.4 84 42.9
Sed0006571 Sechium edule HOM05D003372 ORTHO05D004539 3.5e-08 61.6 84 42.9
QL11p042219 Quercus lobata HOM05D003372 ORTHO05D004539 1.7e-07 59.3 57 52.6
SalBow6G6810 Salvia bowleyana HOM05D003372 ORTHO05D004539 2.5e-06 55.5 75 41.3
SEGI_14759 Sequoiadendron giganteum HOM05D003372 ORTHO05D004539 2.5e-06 55.5 49 55.1
AagrBONN_evm.TU.Sc2ySwM_344.2188 Anthoceros agrestis HOM05D003372 ORTHO05D004539 3.3e-06 55.1 71 49.3
AUR62016698 Chenopodium quinoa HOM05D003372 ORTHO05D004539 4.3e-06 54.7 59 52.5
SMO343G0072 Selaginella moellendorffii HOM05D003372 ORTHO05D004539 7.3e-06 53.9 32 71.9


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