Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 2.0e-52 208.8 101 100.0
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 7.1e-50 200.3 101 97.0
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 9.3e-42 173.3 88 96.6
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 9.3e-42 173.3 88 96.6
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 3.0e-40 168.3 88 93.2
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 7.4e-39 163.7 88 89.8
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 9.6e-39 163.3 88 89.8
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 9.6e-39 163.3 88 89.8
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 2.8e-38 161.8 88 89.8
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 2.8e-38 161.8 88 88.6
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 3.7e-38 161.4 88 88.6
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 4.8e-38 161.0 88 88.6
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 1.4e-37 159.5 88 87.5
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 2.4e-37 158.7 88 87.5
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.4e-37 158.7 88 87.5
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.4e-37 158.7 88 87.5
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 4.1e-37 157.9 88 86.4
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 9.0e-37 156.8 88 86.4
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 9.0e-37 156.8 88 86.4
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 1.5e-36 156.0 88 86.4
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 2.6e-36 155.2 88 85.2
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 5.9e-36 154.1 88 84.1
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 5.9e-36 154.1 88 84.1
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 5.9e-36 154.1 88 84.1
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 1.3e-35 152.9 88 83.0
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.3e-35 152.9 88 84.1
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 1.7e-35 152.5 88 83.0
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 1.7e-35 152.5 88 83.0
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 2.2e-35 152.1 88 83.0
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 2.2e-35 152.1 88 83.0
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 2.2e-35 152.1 88 83.0
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 2.2e-35 152.1 88 83.0
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 1.1e-34 149.8 88 83.0
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 2.5e-34 148.7 88 83.0
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 7.2e-34 147.1 88 83.0
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 2.7e-33 145.2 88 81.8
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 1.0e-32 143.3 88 79.5
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 3.9e-32 141.4 88 78.4
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 2.5e-31 138.7 84 81.0
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 2.5e-31 138.7 72 95.8
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 6.3e-30 134.0 88 78.4
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 5.3e-29 131.0 73 84.9
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 5.3e-29 131.0 73 84.9
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 5.0e-27 124.4 74 81.1
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 1.2e-25 119.8 73 79.5
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 5.1e-24 114.4 70 80.0
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 2.5e-23 112.1 62 85.5
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.7e-22 109.4 73 76.7
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 7.7e-20 100.5 71 69.0
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 6.5e-19 97.4 51 88.2
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 3.6e-17 91.7 56 82.1
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 4.7e-17 91.3 85 57.6
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.5e-15 86.3 56 75.0
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 1.3e-14 83.2 49 77.6
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 2.8e-14 82.0 44 84.1
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 4.8e-14 81.3 50 84.0
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 2.4e-13 79.0 73 61.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.6e-12 75.5 42 88.1
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 3.2e-10 68.6 49 73.5
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 8.0e-09 63.9 47 70.2


User provided reference genes

Program Settings