Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0249171 Helianthus annuus HOM05D000889 ORTHO05D000693 5.7e-61 237.3 110 100.0
HanXRQChr09g0249151 Helianthus annuus HOM05D000889 ORTHO05D000693 1.0e-49 199.9 96 97.9
HanXRQChr09g0249181 Helianthus annuus HOM05D000889 ORTHO05D000693 1.0e-49 199.9 96 97.9
HanXRQChr09g0249191 Helianthus annuus HOM05D000889 ORTHO05D000693 1.0e-49 199.9 96 97.9
Lsat_1_v5_gn_3_128320 Lactuca sativa HOM05D000889 ORTHO05D000693 9.3e-11 70.5 103 35.0
Oeu012579.1 Olea europaea HOM05D000889 ORTHO05D000693 9.3e-11 70.5 84 39.3
DCAR_012804 Daucus carota HOM05D000889 ORTHO05D000693 2.1e-10 69.3 95 38.9
Oeu039738.1 Olea europaea HOM05D000889 ORTHO05D000693 2.7e-10 68.9 89 41.6
DCAR_017178 Daucus carota HOM05D000889 ORTHO05D000693 3.5e-10 68.6 96 32.3
CSS0041793 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 3.0e-09 65.5 98 36.7
HanXRQChr13g0422821 Helianthus annuus HOM05D000889 ORTHO05D000693 3.0e-09 65.5 96 33.3
Aqoxy3G00206 Aquilegia oxysepala HOM05D000889 ORTHO05D000693 3.9e-09 65.1 82 36.6
ECA240G1386 Erigeron canadensis HOM05D000889 ORTHO05D000693 5.1e-09 64.7 91 36.3
Oeu039737.1 Olea europaea HOM05D000889 ORTHO05D000693 5.1e-09 64.7 84 38.1
Medtr7g082590 Medicago truncatula HOM05D000889 ORTHO05D000693 6.6e-09 64.3 92 39.1
TWI77G0259 Tripterygium wilfordii HOM05D000889 ORTHO05D000693 8.7e-09 63.9 88 33.0
DCAR_010702 Daucus carota HOM05D000889 ORTHO05D000693 1.1e-08 63.5 87 35.6
Gohir.A12G054800 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.1e-08 63.5 91 36.3
Rhsim10G0070900 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.1e-08 63.5 85 35.3
Rhsim12G0142000 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.1e-08 63.5 84 36.9
RhsimUnG0075700 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.1e-08 63.5 84 36.9
RhsimUnG0245900 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.1e-08 63.5 85 35.3
HanXRQChr17g0560701 Helianthus annuus HOM05D000889 ORTHO05D000693 1.9e-08 62.8 93 34.4
TPR.G16555 Trifolium pratense HOM05D000889 ORTHO05D000693 2.5e-08 62.4 90 36.7
Eucgr.J01517 Eucalyptus grandis HOM05D000889 ORTHO05D000693 3.3e-08 62.0 89 34.8
Oeu054219.1 Olea europaea HOM05D000889 ORTHO05D000693 3.3e-08 62.0 88 35.2
PGSC0003DMG400005731 Solanum tuberosum HOM05D000889 ORTHO05D000693 3.3e-08 62.0 88 34.1
Manes.01G112700 Manihot esculenta HOM05D000889 ORTHO05D000693 4.3e-08 61.6 84 32.1
Nitab4.5_0007294g0030 Nicotiana tabacum HOM05D000889 ORTHO05D000693 4.3e-08 61.6 96 33.3
Peaxi162Scf00877g00009 Petunia axillaris HOM05D000889 ORTHO05D000693 4.3e-08 61.6 86 33.7
COL.COLO4_09369 Corchorus olitorius HOM05D000889 ORTHO05D000693 5.6e-08 61.2 92 31.5
HanXRQChr17g0559421 Helianthus annuus HOM05D000889 ORTHO05D000693 5.6e-08 61.2 70 40.0
Solyc03g119210.1 Solanum lycopersicum HOM05D000889 ORTHO05D000693 5.6e-08 61.2 88 34.1
Sopen03g038090 Solanum pennellii HOM05D000889 ORTHO05D000693 5.6e-08 61.2 88 34.1
CsaV3_4G010440 Cucumis sativus L. HOM05D000889 ORTHO05D000693 7.3e-08 60.8 89 37.1
Oeu022412.1 Olea europaea HOM05D000889 ORTHO05D000693 7.3e-08 60.8 88 34.1
Sed0015843 Sechium edule HOM05D000889 ORTHO05D000693 7.3e-08 60.8 89 37.1
Gohir.D07G181600 Gossypium hirsutum HOM05D000889 ORTHO05D000693 9.6e-08 60.5 86 31.4
Gorai.001G202600 Gossypium raimondii HOM05D000889 ORTHO05D000693 9.6e-08 60.5 86 31.4
Hma1.2p1_0500F.1_g167240 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 9.6e-08 60.5 98 32.7
Hma1.2p1_1109F.1_g258245 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 9.6e-08 60.5 98 32.7
Nitab4.5_0004279g0030 Nicotiana tabacum HOM05D000889 ORTHO05D000693 9.6e-08 60.5 91 33.0
HanXRQChr13g0422831 Helianthus annuus HOM05D000889 ORTHO05D000693 1.3e-07 60.1 96 29.2
Hma1.2p1_0653F.1_g196040 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 1.3e-07 60.1 90 27.8
Hma1.2p1_1283F.1_g272750 Hydrangea macrophylla HOM05D000889 ORTHO05D000693 1.3e-07 60.1 90 27.8
Migut.L00497 Erythranthe guttata HOM05D000889 ORTHO05D000693 2.1e-07 59.3 93 31.2
AL7G52700 Arabidopsis lyrata HOM05D000889 ORTHO05D000693 2.8e-07 58.9 66 39.4
CSS0014050 Camellia sinensis var. sinensis HOM05D000889 ORTHO05D000693 2.8e-07 58.9 96 34.4
CAN.G1129.10 Capsicum annuum HOM05D000889 ORTHO05D000693 2.8e-07 58.9 83 31.3
Lsat_1_v5_gn_8_142920 Lactuca sativa HOM05D000889 ORTHO05D000693 2.8e-07 58.9 96 30.2
Potri.004G096000 Populus trichocarpa HOM05D000889 ORTHO05D000693 2.8e-07 58.9 91 30.8
PGR042G2741 Punica granatum HOM05D000889 ORTHO05D000693 2.8e-07 58.9 71 39.4
TPR.G25251 Trifolium pratense HOM05D000889 ORTHO05D000693 2.8e-07 58.9 90 33.3
Actinidia18919 Actinidia chinensis HOM05D000289 ORTHO05D000208 3.6e-07 58.5 91 34.1
Aa31LG9G17220 Aethionema arabicum HOM05D000889 ORTHO05D000693 3.6e-07 58.5 89 33.7
Aqoxy3G00205 Aquilegia oxysepala HOM05D000889 ORTHO05D000693 3.6e-07 58.5 88 26.1
CAN.G423.16 Capsicum annuum HOM05D000889 ORTHO05D000693 3.6e-07 58.5 89 30.3
Cpa.g.sc170.36 Carica papaya HOM05D000889 ORTHO05D000693 3.6e-07 58.5 96 28.1
Cc04_g06890 Coffea canephora HOM05D000889 ORTHO05D000693 3.6e-07 58.5 85 34.1
COL.COLO4_20837 Corchorus olitorius HOM05D000889 ORTHO05D000693 3.6e-07 58.5 96 27.1
Manes.01G112600 Manihot esculenta HOM05D000889 ORTHO05D000693 3.6e-07 58.5 88 31.8
CAN.G625.49 Capsicum annuum HOM05D000889 ORTHO05D000693 4.8e-07 58.2 94 30.9
CiPaw.15G134900 Carya illinoinensis HOM05D000889 ORTHO05D000693 4.8e-07 58.2 89 29.2
CiPaw.16G088700 Carya illinoinensis HOM05D000889 ORTHO05D000693 4.8e-07 58.2 91 29.7
COL.COLO4_09367 Corchorus olitorius HOM05D000889 ORTHO05D000693 4.8e-07 58.2 91 28.6
Eucgr.F02789 Eucalyptus grandis HOM05D000889 ORTHO05D000693 4.8e-07 58.2 70 37.1
HanXRQChr09g0262711 Helianthus annuus HOM05D000889 ORTHO05D000693 4.8e-07 58.2 96 33.3
Sopen03g007150 Solanum pennellii HOM05D000889 ORTHO05D000693 4.8e-07 58.2 91 35.2
Thecc.02G222600 Theobroma cacao HOM05D000889 ORTHO05D000693 4.8e-07 58.2 92 32.6
Ciclev10013188m.g Citrus clementina HOM05D000889 ORTHO05D000693 6.2e-07 57.8 88 29.5
MD17G1248900 Malus domestica HOM05D000889 ORTHO05D000693 6.2e-07 57.8 86 34.9
Nn4g23947 Nelumbo nucifera HOM05D000889 ORTHO05D000693 6.2e-07 57.8 88 30.7
Rhsim10G0072100 Rhododendron simsii HOM05D000889 ORTHO05D000693 6.2e-07 57.8 85 30.6
Rhsim10G0072200 Rhododendron simsii HOM05D000889 ORTHO05D000693 6.2e-07 57.8 85 30.6
SalBow5G5360 Salvia bowleyana HOM05D000889 ORTHO05D000693 6.2e-07 57.8 88 31.8
Zm00001eb000850 Zea mays HOM05D000889 ORTHO05D000693 6.2e-07 57.8 70 32.9
CiPaw.03G064500 Carya illinoinensis HOM05D000889 ORTHO05D000693 8.1e-07 57.4 88 35.2
Gohir.A07G174300 Gossypium hirsutum HOM05D000889 ORTHO05D000693 8.1e-07 57.4 86 30.2
Lalb_Chr14g0370991 Lupinus albus HOM05D000889 ORTHO05D000693 8.1e-07 57.4 88 28.4
Nitab4.5_0003908g0010 Nicotiana tabacum HOM05D000889 ORTHO05D000693 8.1e-07 57.4 93 30.1
Rhsim10G0072300 Rhododendron simsii HOM05D000889 ORTHO05D000693 8.1e-07 57.4 85 30.6
Gohir.A12G267200 Gossypium hirsutum HOM05D000889 ORTHO05D000693 1.1e-06 57.0 87 29.9
MD09G1255700 Malus domestica HOM05D000889 ORTHO05D000693 1.1e-06 57.0 89 33.7
Nitab4.5_0000965g0060 Nicotiana tabacum HOM05D000889 ORTHO05D000693 1.1e-06 57.0 90 32.2
Sopen03g007180 Solanum pennellii HOM05D000889 ORTHO05D000693 1.1e-06 57.0 91 33.0
CAN.G610.26 Capsicum annuum HOM05D000889 ORTHO05D000693 1.4e-06 56.6 87 33.3
Ca_25473_v3 Cicer arietinum L. HOM05D000889 ORTHO05D000693 1.4e-06 56.6 88 30.7
Ca_29865_v3 Cicer arietinum L. HOM05D000889 ORTHO05D000693 1.4e-06 56.6 88 30.7
HanXRQChr07g0193821 Helianthus annuus HOM05D000889 ORTHO05D000693 1.4e-06 56.6 93 34.4
Nitab4.5_0001194g0100 Nicotiana tabacum HOM05D000889 ORTHO05D000693 1.4e-06 56.6 88 31.8
Prupe.3G147800 Prunus persica HOM05D000889 ORTHO05D000693 1.4e-06 56.6 84 32.1
Rhsim08G0130800 Rhododendron simsii HOM05D000889 ORTHO05D000693 1.4e-06 56.6 89 32.6
CAN.G625.50 Capsicum annuum HOM05D000889 ORTHO05D000693 1.8e-06 56.2 94 29.8
Lsat_1_v5_gn_8_142881 Lactuca sativa HOM05D000889 ORTHO05D000693 1.8e-06 56.2 93 31.2
Lalb_Chr14g0364861 Lupinus albus HOM05D000889 ORTHO05D000693 1.8e-06 56.2 89 30.3
Medtr7g007440 Medicago truncatula HOM05D000889 ORTHO05D000693 1.8e-06 56.2 93 31.2
Phvul.004G154200 Phaseolus vulgaris HOM05D000889 ORTHO05D000693 1.8e-06 56.2 88 29.5
SalBow8G1049 Salvia bowleyana HOM05D000889 ORTHO05D000693 1.8e-06 56.2 96 28.1
Sed0012370 Sechium edule HOM05D000889 ORTHO05D000693 1.8e-06 56.2 90 27.8
ECA233G1030 Erigeron canadensis HOM05D000889 ORTHO05D000693 2.4e-06 55.8 86 33.7
SalBow5G2647 Salvia bowleyana HOM05D000889 ORTHO05D000693 2.4e-06 55.8 89 32.6
THA.LOC104805585 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 2.4e-06 55.8 64 37.5
ClCG04G010940 Citrullus lanatus HOM05D000889 ORTHO05D000693 3.1e-06 55.5 88 31.8
Glyma.09G181100 Glycine max HOM05D000889 ORTHO05D000693 3.1e-06 55.5 85 30.6
Glyma.18G294200 Glycine max HOM05D000889 ORTHO05D000693 3.1e-06 55.5 89 31.5
Gohir.D12G054200 Gossypium hirsutum HOM05D000889 ORTHO05D000693 3.1e-06 55.5 91 34.1
Gohir.D12G267700 Gossypium hirsutum HOM05D000889 ORTHO05D000693 3.1e-06 55.5 87 28.7
Gorai.008G287700 Gossypium raimondii HOM05D000889 ORTHO05D000693 3.1e-06 55.5 87 28.7
QL02p050390 Quercus lobata HOM05D000889 ORTHO05D000693 3.1e-06 55.5 92 32.6
QL04p011999 Quercus lobata HOM05D000889 ORTHO05D000693 3.1e-06 55.5 92 32.6
BcaC05g27556 Brassica carinata HOM05D000889 ORTHO05D000693 4.0e-06 55.1 93 30.1
A05p20910 Brassica napus HOM05D000889 ORTHO05D000693 4.0e-06 55.1 91 29.7
C05p35400 Brassica napus HOM05D000889 ORTHO05D000693 4.0e-06 55.1 93 30.1
BraA05t20996Z Brassica rapa HOM05D000889 ORTHO05D000693 4.0e-06 55.1 91 29.7
CAN.G625.48 Capsicum annuum HOM05D000889 ORTHO05D000693 4.0e-06 55.1 94 29.8
Manes.05G132600 Manihot esculenta HOM05D000889 ORTHO05D000693 4.0e-06 55.1 88 29.5
Potri.017G118700 Populus trichocarpa HOM05D000889 ORTHO05D000693 4.0e-06 55.1 91 29.7
Sc10g0009400 Simmondsia chinensis HOM05D000889 ORTHO05D000693 4.0e-06 55.1 88 29.5
Thecc.03G040600 Theobroma cacao HOM05D000889 ORTHO05D000693 4.0e-06 55.1 91 26.4
TWI63G0290 Tripterygium wilfordii HOM05D000889 ORTHO05D000693 4.0e-06 55.1 88 29.5
BolC5t33476H Brassica oleracea HOM05D000889 ORTHO05D000693 5.3e-06 54.7 90 28.9
Thhalv10028232m.g Eutrema salsugineum HOM05D000889 ORTHO05D000693 5.3e-06 54.7 77 37.7
Gorai.008G057100 Gossypium raimondii HOM05D000889 ORTHO05D000693 5.3e-06 54.7 91 33.0
Os03g0111300 Oryza sativa ssp. japonica HOM05D000889 ORTHO05D000693 5.3e-06 54.7 49 40.8
Aa31LG8G5130 Aethionema arabicum HOM05D000889 ORTHO05D000693 6.9e-06 54.3 70 34.3
ATR0807G186 Amborella trichopoda HOM05D000889 ORTHO05D000693 6.9e-06 54.3 66 39.4
CARHR214570 Cardamine hirsuta HOM05D000889 ORTHO05D000693 6.9e-06 54.3 60 41.7
Ciclev10017614m.g Citrus clementina HOM05D000889 ORTHO05D000693 6.9e-06 54.3 80 36.2
QL01p010843 Quercus lobata HOM05D000889 ORTHO05D000693 6.9e-06 54.3 88 30.7
Sabra15G0040600 Salix brachista HOM05D000889 ORTHO05D000693 6.9e-06 54.3 92 26.1
SalBow5G2482 Salvia bowleyana HOM05D000889 ORTHO05D000693 6.9e-06 54.3 89 31.5
Zm00001eb294870 Zea mays HOM05D000889 ORTHO05D000693 6.9e-06 54.3 91 35.2
CANSAT80G1394 Cannabis sativa HOM05D000889 ORTHO05D000693 9.0e-06 53.9 91 28.6
CiPaw.05G241500 Carya illinoinensis HOM05D000889 ORTHO05D000693 9.0e-06 53.9 89 32.6
Cc04_g06900 Coffea canephora HOM05D000889 ORTHO05D000693 9.0e-06 53.9 91 28.6
Migut.L00498 Erythranthe guttata HOM05D000889 ORTHO05D000693 9.0e-06 53.9 86 27.9
Os05g0550300 Oryza sativa ssp. japonica HOM05D000889 ORTHO05D000693 9.0e-06 53.9 92 31.5
Os10g0504900 Oryza sativa ssp. japonica HOM05D000889 ORTHO05D000693 9.0e-06 53.9 75 32.0
Phvul.004G002600 Phaseolus vulgaris HOM05D000889 ORTHO05D000693 9.0e-06 53.9 90 28.9
Prupe.3G147900 Prunus persica HOM05D000889 ORTHO05D000693 9.0e-06 53.9 84 29.8
QL02p049732 Quercus lobata HOM05D000889 ORTHO05D000693 9.0e-06 53.9 92 31.5
QL02p050473 Quercus lobata HOM05D000889 ORTHO05D000693 9.0e-06 53.9 92 31.5
Rhsim08G0083800 Rhododendron simsii HOM05D000889 ORTHO05D000693 9.0e-06 53.9 88 30.7
Rhsim09G0104000 Rhododendron simsii HOM05D000889 ORTHO05D000693 9.0e-06 53.9 68 33.8
Rhsim10G0070600 Rhododendron simsii HOM05D000889 ORTHO05D000693 9.0e-06 53.9 91 28.6
Sed0014311 Sechium edule HOM05D000889 ORTHO05D000693 9.0e-06 53.9 80 32.5
Sopen03g007190 Solanum pennellii HOM05D000889 ORTHO05D000693 9.0e-06 53.9 88 34.1
Sopen05g004650 Solanum pennellii HOM05D000889 ORTHO05D000693 9.0e-06 53.9 58 37.9
PGSC0003DMG400026381 Solanum tuberosum HOM05D000889 ORTHO05D000693 9.0e-06 53.9 88 29.5
THA.LOC109116626 Tarenaya hassleriana HOM05D000889 ORTHO05D000693 9.0e-06 53.9 63 34.9


User provided reference genes

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