Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 1.4e-117 426.4 224 100.0
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.9e-96 355.5 220 85.0
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.1e-95 353.6 223 81.2
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.1e-94 347.8 218 82.1
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.5e-87 326.6 209 77.5
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 4.3e-87 325.1 209 77.5
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 5.6e-87 324.7 224 73.7
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 7.3e-87 324.3 220 76.4
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.2e-86 323.6 224 74.6
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.2e-86 323.6 209 77.5
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.6e-86 323.2 216 75.9
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.1e-86 322.8 224 74.6
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 6.1e-86 321.2 209 76.1
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 8.0e-86 320.9 224 73.2
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.3e-85 319.3 219 74.0
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 2.3e-85 319.3 217 76.0
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 3.0e-85 318.9 224 70.1
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.2e-84 317.0 224 71.4
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.2e-84 317.0 215 73.0
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.2e-84 317.0 224 71.9
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 3.4e-84 315.5 224 72.8
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 4.4e-84 315.1 224 71.0
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 4.4e-84 315.1 215 75.8
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.7e-84 314.7 220 71.8
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 5.7e-84 314.7 210 75.2
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.8e-84 313.9 215 75.3
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 9.8e-84 313.9 213 73.2
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 9.8e-84 313.9 216 72.2
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.3e-83 313.5 224 71.4
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.3e-83 313.5 207 74.9
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.3e-83 313.5 217 72.8
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-83 313.5 224 69.6
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.7e-83 313.2 213 73.7
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 3.7e-83 312.0 208 74.5
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 3.7e-83 312.0 215 72.6
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.7e-83 312.0 220 71.4
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 3.7e-83 312.0 218 71.1
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 4.9e-83 311.6 224 71.4
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 6.4e-83 311.2 224 70.1
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.4e-83 311.2 212 75.9
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.4e-83 311.2 215 75.8
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 6.4e-83 311.2 219 74.0
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 6.4e-83 311.2 220 71.8
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.4e-82 310.1 230 70.9
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.8e-82 309.7 209 75.6
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.8e-82 309.7 220 72.3
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.4e-82 309.3 224 68.8
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 4.1e-82 308.5 210 72.9
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 4.1e-82 308.5 217 71.0
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 4.1e-82 308.5 219 70.8
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.4e-82 308.1 220 70.9
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 5.4e-82 308.1 217 71.0
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 9.2e-82 307.4 220 71.8
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.2e-81 307.0 208 73.6
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.2e-81 307.0 217 72.4
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.2e-81 307.0 217 71.4
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.2e-81 307.0 211 74.9
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.6e-81 306.6 220 73.2
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.6e-81 306.6 222 70.7
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 4.6e-81 305.1 204 74.5
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 5.9e-81 304.7 224 67.9
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 5.9e-81 304.7 221 70.6
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 5.9e-81 304.7 218 71.6
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 7.8e-81 304.3 224 70.1
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 7.8e-81 304.3 228 68.9
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 7.8e-81 304.3 217 71.9
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.0e-80 303.9 215 71.2
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.3e-80 303.5 224 68.3
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.3e-80 303.5 215 69.3
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.3e-80 303.5 217 70.5
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.3e-80 303.5 215 72.1
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.7e-80 303.1 214 70.6
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.7e-80 303.1 219 70.3
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.3e-80 302.8 219 68.5
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.3e-80 302.8 224 70.5
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 3.0e-80 302.4 246 65.4
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.0e-80 302.4 211 74.9
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 3.0e-80 302.4 226 68.6
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.9e-80 302.0 224 68.3
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 3.9e-80 302.0 221 69.2
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 5.0e-80 301.6 204 72.5
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.9e-79 299.7 229 66.8
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.9e-79 299.7 221 69.2
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 2.5e-79 299.3 229 66.4
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.5e-79 299.3 229 66.8
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 4.3e-79 298.5 221 69.2
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 4.3e-79 298.5 217 70.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 4.3e-79 298.5 219 69.9
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.3e-79 298.5 225 68.0
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.3e-79 297.7 217 69.6
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-78 297.0 220 69.5
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.2e-78 297.0 216 72.2
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.2e-78 297.0 213 70.9
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.6e-78 296.6 219 67.1
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.8e-78 295.8 239 65.7
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.0e-77 293.9 224 67.0
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-77 293.9 224 67.0
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.4e-77 293.5 219 68.9
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.3e-77 292.7 216 69.4
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 3.1e-77 292.4 221 67.4
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 8.9e-77 290.8 217 70.0
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 2.0e-76 289.7 239 63.6
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.4e-76 288.9 221 67.4
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.5e-76 287.7 208 71.6
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.3e-75 287.0 272 59.2
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 2.2e-75 286.2 239 62.3
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 4.9e-75 285.0 217 65.0
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-73 280.4 233 63.9
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-73 280.4 235 63.0
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.0e-73 279.6 233 63.9
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 7.8e-73 277.7 227 67.4
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.7e-72 276.6 217 69.1
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.3e-72 276.2 316 51.6
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 5.0e-72 275.0 217 68.7
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.1e-71 273.9 223 61.9
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.1e-71 273.9 220 61.8
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 2.1e-70 269.6 170 80.0
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 5.2e-69 265.0 169 77.5
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.8e-69 264.6 208 65.4
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 8.9e-69 264.2 215 68.8
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 7.5e-68 261.2 208 62.0
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.2e-66 255.8 217 65.4
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.5e-65 252.3 163 76.1
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 7.8e-65 251.1 219 60.7
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.3e-64 250.4 215 63.3
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 5.1e-64 248.4 233 61.4
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 7.6e-60 234.6 223 53.8
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 5.4e-58 228.4 231 54.5
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 4.6e-57 225.3 210 53.8
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 6.0e-57 224.9 171 66.7
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 7.8e-57 224.6 175 58.9
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 2.3e-56 223.0 208 57.7
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 9.6e-55 217.6 123 85.4
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.2e-54 217.2 166 66.3
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.6e-54 215.7 150 73.3
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.4e-52 209.1 119 85.7
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.4e-52 208.8 203 55.2
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.3e-51 207.2 149 72.5
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.4e-51 204.9 117 82.1
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 4.2e-50 202.2 252 43.3
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.1e-49 199.9 162 63.6
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 3.9e-48 195.7 218 52.3
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 9.6e-47 191.0 119 74.8
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 3.8e-43 179.1 104 80.8
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 4.2e-42 175.6 136 66.9
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 6.0e-41 171.8 189 54.5
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.5e-39 167.2 219 45.2
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 2.1e-38 163.3 190 46.8
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.1e-37 161.0 298 38.3
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.6e-33 147.1 178 48.3
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-27 127.5 81 74.1
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.9e-26 123.6 116 57.8
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 7.9e-25 118.2 167 43.7
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 8.7e-24 114.8 75 73.3
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.5e-23 114.0 167 43.1
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 5.7e-23 112.1 81 69.1
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.3e-22 110.9 64 76.6
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.7e-19 100.5 86 62.8
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 2.2e-19 100.1 81 63.0
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 2.2e-19 100.1 67 74.6
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 6.5e-19 98.6 168 39.3
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 8.5e-19 98.2 59 79.7
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 5.5e-18 95.5 111 48.6
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 7.2e-18 95.1 237 33.8
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 7.2e-18 95.1 95 55.8
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 4.6e-17 92.4 137 39.4
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.9e-15 87.0 93 57.0
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.2e-14 83.6 110 45.5
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 3.1e-13 79.7 160 35.0
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.4e-10 70.9 106 43.4
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 1.4e-08 64.3 45 62.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 2.3e-08 63.5 70 51.4
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 3.9e-08 62.8 52 61.5
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 6.7e-08 62.0 122 39.3
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.2e-06 57.0 44 70.5
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.8e-06 56.6 34 64.7
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 8.2e-06 55.1 39 69.2


User provided reference genes

Program Settings