Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 4.5e-158 561.2 283 100.0
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 2.6e-89 332.8 288 67.7
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 4.7e-51 205.7 305 49.2
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 5.3e-42 175.6 241 47.7
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 6.4e-40 168.7 290 42.8
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 4.2e-39 166.0 321 40.5
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 2.1e-38 163.7 240 45.4
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 4.6e-38 162.5 240 45.4
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 1.8e-37 160.6 231 47.2
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 1.8e-37 160.6 244 45.1
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 1.6e-35 154.1 232 45.7
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 6.2e-35 152.1 234 42.7
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 4.0e-34 149.4 208 46.6
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.3e-32 144.4 294 38.1
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 2.2e-32 143.7 303 38.3
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.2e-32 143.7 258 43.0
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 8.4e-32 141.7 259 43.2
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 5.5e-31 139.0 241 40.7
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 2.7e-30 136.7 261 42.1
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.7e-30 136.7 191 45.0
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 2.7e-30 136.7 191 45.0
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.5e-30 136.3 204 43.6
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 1.8e-29 134.0 186 43.5
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.3e-29 133.7 186 45.2
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 1.9e-28 130.6 222 40.5
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 5.6e-28 129.0 191 45.5
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 1.3e-27 127.9 221 38.9
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.4e-26 123.6 185 42.7
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 6.9e-26 122.1 180 44.4
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 3.4e-25 119.8 221 36.7
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 4.5e-25 119.4 279 36.2
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 5.8e-25 119.0 253 39.5
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 1.0e-24 118.2 245 35.1
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.7e-24 117.5 196 41.3
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.7e-24 117.5 204 40.7
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.7e-24 117.5 204 40.7
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 3.8e-24 116.3 185 41.6
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 6.5e-24 115.5 188 41.0
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 6.5e-24 115.5 195 40.5
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.1e-23 114.8 282 35.8
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 1.1e-23 114.8 203 41.4
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.4e-23 114.4 204 40.2
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 1.9e-23 114.0 234 38.0
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 2.5e-23 113.6 189 40.2
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 5.5e-23 112.5 182 40.7
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 5.5e-23 112.5 176 40.9
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 5.5e-23 112.5 216 37.5
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 6.0e-22 109.0 239 36.8
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 6.0e-22 109.0 188 39.4
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 7.9e-22 108.6 187 38.0
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 1.0e-21 108.2 197 40.1
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.3e-21 107.8 201 39.3
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.8e-21 107.5 176 42.0
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 3.0e-21 106.7 206 38.3
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 3.9e-21 106.3 179 40.8
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 3.9e-21 106.3 183 41.0
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 6.7e-21 105.5 185 39.5
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 6.7e-21 105.5 176 42.6
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 8.7e-21 105.1 178 43.3
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 8.7e-21 105.1 178 43.3
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 8.7e-21 105.1 203 36.5
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 8.7e-21 105.1 190 40.0
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.1e-20 104.8 253 35.6
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.1e-20 104.8 183 36.6
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.5e-20 104.4 179 42.5
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.5e-20 104.4 201 38.3
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 1.5e-20 104.4 181 37.6
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.5e-20 104.4 196 36.7
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.5e-20 104.4 173 39.9
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.9e-20 104.0 178 39.9
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.3e-20 103.2 189 39.2
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 3.3e-20 103.2 206 36.9
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 3.3e-20 103.2 179 40.2
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 3.3e-20 103.2 239 34.7
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.3e-20 102.8 182 39.6
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 4.3e-20 102.8 182 39.6
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 5.7e-20 102.4 195 36.4
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 5.7e-20 102.4 193 36.3
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 9.7e-20 101.7 195 34.9
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 9.7e-20 101.7 203 36.0
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 1.3e-19 101.3 199 37.2
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.3e-19 101.3 201 36.8
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.6e-19 100.9 188 37.2
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 2.2e-19 100.5 227 35.2
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.8e-19 100.1 184 36.4
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 3.7e-19 99.8 201 34.3
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 8.2e-19 98.6 207 33.8
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.1e-18 98.2 140 40.7
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 1.4e-18 97.8 72 62.5
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 1.8e-18 97.4 193 35.8
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 3.1e-18 96.7 181 35.9
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 3.1e-18 96.7 179 39.7
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 5.3e-18 95.9 185 34.6
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 5.3e-18 95.9 193 34.7
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 6.9e-18 95.5 188 34.6
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 1.2e-17 94.7 181 38.7
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 1.2e-17 94.7 189 34.4
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 1.5e-17 94.4 180 37.2
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 1.5e-17 94.4 185 37.3
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.5e-17 94.4 140 39.3
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 2.0e-17 94.0 195 31.8
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 2.0e-17 94.0 215 33.0
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 2.6e-17 93.6 185 39.5
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 1.7e-16 90.9 190 34.2
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.7e-16 90.9 188 34.6
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 2.9e-16 90.1 187 34.2
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 3.8e-16 89.7 217 33.6
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 5.0e-16 89.4 180 36.1
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 8.5e-16 88.6 169 37.3
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 2.5e-15 87.0 181 35.9
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 2.5e-15 87.0 181 35.4
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 2.5e-15 87.0 191 37.2
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 3.2e-15 86.7 238 31.9
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 3.2e-15 86.7 185 34.6
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 3.2e-15 86.7 172 36.6
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 3.2e-15 86.7 172 36.6
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 5.5e-15 85.9 181 35.9
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 5.5e-15 85.9 181 35.9
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.2e-14 84.7 196 35.7
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 2.1e-14 84.0 185 33.5
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.1e-14 84.0 184 34.2
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 2.7e-14 83.6 184 33.2
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 7.9e-14 82.0 186 33.3
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 1.0e-13 81.6 179 34.1
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 1.0e-13 81.6 180 35.6
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 1.4e-13 81.3 179 34.6
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 3.0e-13 80.1 220 33.2
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 3.9e-13 79.7 231 30.3
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 3.9e-13 79.7 179 33.5
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 3.9e-13 79.7 179 33.5
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 5.1e-13 79.3 197 29.4
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 6.7e-13 79.0 186 33.9
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 6.7e-13 79.0 186 33.9
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 8.8e-13 78.6 174 33.9
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.1e-12 78.2 174 33.9
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.5e-12 77.8 209 31.6
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 1.5e-12 77.8 179 33.0
ECA236G0017 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.5e-12 77.8 181 33.7
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 2.0e-12 77.4 178 33.7
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 2.0e-12 77.4 178 33.7
Lsat_1_v5_gn_9_82161 Lactuca sativa HOM05D050257 ORTHO05D003719 2.5e-12 77.0 137 33.6
HanXRQChr07g0197201 Helianthus annuus HOM05D003268 ORTHO05D003719 3.3e-12 76.6 173 30.1
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 5.7e-12 75.9 181 33.7
Lsat_1_v5_gn_7_63941 Lactuca sativa HOM05D003268 ORTHO05D003719 5.7e-12 75.9 150 45.3
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 5.7e-12 75.9 260 30.8
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 7.4e-12 75.5 178 35.4
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 7.4e-12 75.5 179 34.1
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 9.7e-12 75.1 188 30.9
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 9.7e-12 75.1 212 30.7
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.3e-11 74.7 180 30.0
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 1.3e-11 74.7 181 30.4
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.3e-11 74.7 262 29.8
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.3e-11 74.7 179 34.1
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 2.2e-11 73.9 167 34.7
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 2.2e-11 73.9 168 35.1
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 2.8e-11 73.6 76 50.0
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 2.8e-11 73.6 167 33.5
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 3.7e-11 73.2 177 33.9
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 3.7e-11 73.2 177 33.9
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 3.7e-11 73.2 216 30.6
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 4.8e-11 72.8 229 35.4
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 4.8e-11 72.8 250 30.0
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 4.8e-11 72.8 170 32.4
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 4.8e-11 72.8 170 32.4
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 6.3e-11 72.4 185 31.4
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 8.2e-11 72.0 231 30.7
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.1e-10 71.6 181 29.8
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 1.4e-10 71.2 180 32.8
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 2.4e-10 70.5 186 28.0
Dinv24510 Davidia involucrata HOM05D003268 ORTHO05D003719 2.4e-10 70.5 150 39.3
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 3.1e-10 70.1 193 29.0
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 3.1e-10 70.1 176 32.4
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 6.9e-10 68.9 179 33.0
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 6.9e-10 68.9 245 29.0
SEGI_18442 Sequoiadendron giganteum HOM05D003268 ORTHO05D003719 6.9e-10 68.9 238 30.7
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 6.9e-10 68.9 185 30.3
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 9.1e-10 68.6 176 31.2
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 1.2e-09 68.2 186 29.0
Migut.B00879 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.5e-09 67.8 220 30.9
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 4.5e-09 66.2 179 30.7
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 2.9e-08 63.5 173 31.8
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 4.2e-07 59.7 163 31.9
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 1.2e-06 58.2 98 34.7
unitig_578.g15944 Utricularia gibba HOM05D003268 ORTHO05D003719 1.6e-06 57.8 73 52.1


User provided reference genes

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