Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 4.9e-60 234.2 112 100.0
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 4.3e-40 167.9 90 88.9
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 1.2e-29 133.3 88 69.3
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 2.0e-29 132.5 88 65.9
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 2.6e-29 132.1 88 71.6
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 7.7e-29 130.6 88 70.5
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 7.7e-29 130.6 90 67.8
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 7.7e-29 130.6 87 69.0
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 1.3e-28 129.8 88 68.2
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 2.2e-28 129.0 88 68.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 2.2e-28 129.0 89 67.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 2.9e-28 128.6 88 68.2
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 2.9e-28 128.6 88 69.3
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 5.0e-28 127.9 88 67.0
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 5.0e-28 127.9 88 69.3
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 6.5e-28 127.5 88 67.0
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 8.5e-28 127.1 88 69.3
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 8.5e-28 127.1 88 69.3
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 8.5e-28 127.1 87 67.8
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 1.1e-27 126.7 97 61.9
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 1.4e-27 126.3 89 67.4
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 1.4e-27 126.3 88 68.2
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.4e-27 126.3 88 68.2
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.4e-27 126.3 88 68.2
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.4e-27 126.3 88 68.2
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.4e-27 126.3 88 68.2
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 1.9e-27 125.9 88 68.2
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 2.5e-27 125.6 88 67.0
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 3.2e-27 125.2 88 65.9
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 4.2e-27 124.8 88 65.9
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 7.2e-27 124.0 87 64.4
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 7.2e-27 124.0 89 66.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 7.2e-27 124.0 88 65.9
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 1.2e-26 123.2 87 67.8
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 1.2e-26 123.2 88 65.9
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 1.2e-26 123.2 88 67.0
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 1.6e-26 122.9 88 65.9
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 2.1e-26 122.5 88 63.6
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.1e-26 122.5 88 63.6
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.1e-26 122.5 88 64.8
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.1e-26 122.5 97 56.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 2.1e-26 122.5 88 65.9
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.7e-26 122.1 87 67.8
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 2.7e-26 122.1 88 65.9
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 2.7e-26 122.1 88 61.4
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 3.6e-26 121.7 88 61.4
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.6e-26 121.7 88 63.6
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 3.6e-26 121.7 88 62.5
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 4.7e-26 121.3 88 63.6
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 8.0e-26 120.6 87 66.7
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 8.0e-26 120.6 86 65.1
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 1.0e-25 120.2 87 66.7
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 1.4e-25 119.8 88 65.9
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 1.8e-25 119.4 87 65.5
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.8e-25 119.4 88 64.8
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 2.3e-25 119.0 88 60.2
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 2.3e-25 119.0 88 64.8
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 2.3e-25 119.0 89 61.8
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 2.3e-25 119.0 89 61.8
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 3.0e-25 118.6 108 53.7
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 3.0e-25 118.6 93 62.4
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 5.2e-25 117.9 88 59.1
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 5.2e-25 117.9 87 65.5
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 6.7e-25 117.5 87 66.7
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 6.7e-25 117.5 88 62.5
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 6.7e-25 117.5 87 64.4
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 1.1e-24 116.7 88 63.6
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.5e-24 116.3 87 63.2
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 1.5e-24 116.3 88 61.4
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 2.0e-24 115.9 88 60.2
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 2.0e-24 115.9 88 63.6
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 2.6e-24 115.5 95 57.9
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 2.6e-24 115.5 87 63.2
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 2.6e-24 115.5 87 64.4
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 2.6e-24 115.5 88 63.6
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 2.6e-24 115.5 88 62.5
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 3.3e-24 115.2 87 64.4
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 3.3e-24 115.2 88 61.4
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 4.4e-24 114.8 89 60.7
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 5.7e-24 114.4 87 65.5
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 7.4e-24 114.0 88 61.4
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 1.3e-23 113.2 88 61.4
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 1.3e-23 113.2 87 64.4
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 1.7e-23 112.8 88 63.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 2.2e-23 112.5 87 62.1
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 3.7e-23 111.7 87 59.8
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 4.8e-23 111.3 87 62.1
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 4.8e-23 111.3 87 62.1
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 6.3e-23 110.9 87 64.4
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 8.2e-23 110.5 87 56.3
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.1e-22 110.2 88 53.4
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.1e-22 110.2 88 53.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 1.4e-22 109.8 78 64.1
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 4.1e-22 108.2 87 60.9
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 7.0e-22 107.5 108 51.9
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 7.0e-22 107.5 89 56.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 9.1e-22 107.1 78 64.1
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 1.2e-21 106.7 87 59.8
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 1.2e-21 106.7 87 59.8
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 2.6e-21 105.5 106 52.8
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 7.7e-21 104.0 89 52.8
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 3.8e-20 101.7 87 57.5
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 1.5e-19 99.8 108 47.2
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.2e-19 98.6 68 66.2
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 7.2e-19 97.4 69 65.2
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 9.4e-19 97.1 68 64.7
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 2.7e-18 95.5 108 47.2
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 4.7e-18 94.7 108 45.4
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 3.1e-14 82.0 87 42.5
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 4.5e-13 78.2 115 37.4
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 7.7e-13 77.4 115 37.4
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 1.3e-12 76.6 116 42.2
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.1e-11 73.6 113 37.2
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 2.0e-08 62.8 59 49.2
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 2.4e-06 55.8 77 36.4


User provided reference genes

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