Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 2.9e-148 528.5 260 100.0
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.4e-145 519.6 260 97.7
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 8.3e-127 457.2 256 85.2
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 5.1e-116 421.4 260 76.5
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 2.1e-106 389.4 246 74.4
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.4e-105 386.7 256 71.1
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 5.8e-104 381.3 255 69.8
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 9.9e-104 380.6 258 70.5
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 1.7e-103 379.8 249 72.3
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 1.9e-102 376.3 247 70.9
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 3.2e-102 375.6 246 70.7
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 1.2e-101 373.6 244 73.0
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 1.6e-101 373.2 245 72.7
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 2.1e-101 372.9 242 71.1
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 3.5e-101 372.1 256 68.4
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.0e-101 371.3 252 70.2
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 6.0e-101 371.3 243 72.4
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 7.8e-101 370.9 252 69.8
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.7e-100 369.8 255 68.2
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.9e-100 368.6 252 69.4
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 3.9e-100 368.6 253 68.8
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 5.1e-100 368.2 239 71.5
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 5.1e-100 368.2 256 67.6
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 8.7e-100 367.5 252 69.8
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 8.7e-100 367.5 256 67.6
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 3.3e-99 365.5 293 61.8
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 4.3e-99 365.2 255 67.8
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 5.6e-99 364.8 241 69.7
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 7.3e-99 364.4 254 68.5
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.3e-98 363.6 257 69.6
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 1.6e-98 363.2 242 68.6
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 1.6e-98 363.2 241 69.3
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 2.8e-98 362.5 254 66.9
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.6e-98 362.1 253 66.8
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 3.6e-98 362.1 250 65.2
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 4.8e-98 361.7 254 65.4
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 6.2e-98 361.3 250 67.6
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.1e-97 360.5 241 70.1
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.4e-97 360.1 254 64.2
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 1.8e-97 359.8 243 68.7
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 1.8e-97 359.8 254 67.3
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 2.4e-97 359.4 246 69.1
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 4.0e-97 358.6 239 68.6
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 9.0e-97 357.5 255 66.3
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 9.0e-97 357.5 247 67.2
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 1.5e-96 356.7 254 66.5
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 2.0e-96 356.3 255 64.3
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 2.0e-96 356.3 242 68.2
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 2.0e-96 356.3 250 64.0
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 2.6e-96 355.9 251 64.9
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 2.6e-96 355.9 246 67.5
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 4.5e-96 355.1 252 65.9
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 5.8e-96 354.8 254 63.8
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 9.9e-96 354.0 246 66.3
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.3e-95 353.6 274 63.5
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.3e-95 353.6 255 66.3
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 1.7e-95 353.2 246 65.9
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 2.2e-95 352.8 246 66.7
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.2e-95 352.8 251 68.1
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 6.4e-95 351.3 246 67.1
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.1e-94 350.5 247 68.0
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.9e-94 349.7 247 67.6
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 1.9e-94 349.7 246 65.9
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 5.4e-94 348.2 247 65.6
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 7.1e-94 347.8 254 62.6
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 9.3e-94 347.4 247 67.6
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.2e-93 347.1 247 67.6
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 1.6e-93 346.7 245 66.9
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 2.7e-93 345.9 244 66.4
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 4.6e-93 345.1 247 64.4
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 4.6e-93 345.1 245 64.5
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 4.6e-93 345.1 240 66.7
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.6e-93 345.1 247 67.2
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 4.6e-93 345.1 254 62.6
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 7.9e-93 344.4 247 64.0
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 7.9e-93 344.4 248 65.3
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 7.9e-93 344.4 246 65.9
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 7.9e-93 344.4 252 63.1
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 1.8e-92 343.2 265 64.5
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 2.3e-92 342.8 247 64.0
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 2.3e-92 342.8 243 63.4
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 3.0e-92 342.4 243 63.0
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 3.9e-92 342.0 248 66.9
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 5.1e-92 341.7 243 63.0
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 5.1e-92 341.7 243 63.0
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 5.1e-92 341.7 254 63.4
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 5.1e-92 341.7 238 65.5
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 6.7e-92 341.3 232 68.1
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 8.7e-92 340.9 224 71.4
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.1e-91 340.5 254 63.4
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.5e-91 340.1 254 62.2
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 3.3e-91 339.0 254 61.0
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 3.3e-91 339.0 243 63.0
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 5.6e-91 338.2 243 63.8
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 9.6e-91 337.4 243 65.0
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 9.6e-91 337.4 268 60.4
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.3e-90 337.0 254 61.8
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 2.1e-90 336.3 291 58.1
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.8e-90 335.9 243 62.1
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 4.0e-89 332.0 228 69.7
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 6.9e-89 331.3 252 61.1
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 7.6e-88 327.8 264 59.5
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 7.1e-86 321.2 245 62.0
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 4.6e-85 318.5 243 60.5
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 4.6e-85 318.5 243 60.5
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 3.0e-84 315.8 248 60.9
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 4.3e-83 312.0 203 72.9
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 4.0e-81 305.4 254 59.4
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.2e-80 303.9 201 68.7
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 2.0e-80 303.1 201 68.2
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.1e-78 297.4 217 62.2
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.6e-77 293.5 277 53.4
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 4.6e-77 292.0 186 71.0
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 1.8e-76 290.0 169 76.3
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 3.0e-76 289.3 188 70.7
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 4.5e-72 275.4 252 55.2
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 5.9e-72 275.0 236 53.4
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.0e-71 274.2 139 95.7
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.6e-69 266.9 246 51.6
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.8e-66 256.1 224 52.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 8.2e-66 254.6 254 50.4
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.4e-65 253.1 247 52.2
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.4e-65 253.1 194 59.8
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.0e-63 247.7 237 47.7
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 5.0e-63 245.4 126 93.7
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 5.5e-62 241.9 185 57.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 5.3e-57 225.3 171 57.9
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 2.6e-56 223.0 129 79.1
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 7.7e-56 221.5 192 54.2
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 1.6e-53 213.8 210 48.1
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.3e-52 209.9 243 45.7
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.2e-48 197.6 140 64.3
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 3.6e-45 186.0 254 44.9
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 9.7e-43 177.9 264 37.5
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 4.8e-42 175.6 218 46.3
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.1e-41 174.5 223 40.4
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 1.4e-41 174.1 128 59.4
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.8e-41 173.7 276 39.1
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.7e-40 169.9 107 72.9
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 3.5e-40 169.5 116 67.2
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.3e-39 167.5 142 56.3
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.9e-30 137.1 98 66.3
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 3.7e-26 122.9 79 69.6
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 4.3e-22 109.4 64 75.0
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 6.8e-20 102.1 82 58.5
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.0e-15 88.2 60 65.0
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 1.4e-12 77.8 70 52.9
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 3.7e-10 69.7 152 31.6


User provided reference genes

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