Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 5.0e-22 107.1 61 100.0
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 1.7e-14 82.0 53 83.0
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 3.8e-14 80.9 61 82.0
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 6.1e-12 73.6 42 92.9
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 6.1e-12 73.6 60 73.3
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 1.4e-11 72.4 39 97.4
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.4e-11 72.4 39 97.4
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 1.4e-11 72.4 39 97.4
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 2.3e-11 71.6 42 88.1
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 3.0e-11 71.2 42 88.1
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 3.0e-11 71.2 42 88.1
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 3.9e-11 70.9 48 81.2
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 3.9e-11 70.9 39 94.9
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 3.9e-11 70.9 39 94.9
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 5.1e-11 70.5 41 90.2
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 6.7e-11 70.1 40 92.5
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 6.7e-11 70.1 41 87.8
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 8.8e-11 69.7 39 92.3
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 8.8e-11 69.7 39 92.3
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 1.1e-10 69.3 40 90.0
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 1.5e-10 68.9 40 87.5
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 1.5e-10 68.9 40 87.5
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 1.5e-10 68.9 40 87.5
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 1.5e-10 68.9 40 87.5
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 1.5e-10 68.9 40 87.5
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 1.5e-10 68.9 40 87.5
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 2.0e-10 68.6 39 89.7
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.0e-10 68.6 41 85.4
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 2.0e-10 68.6 39 89.7
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 2.0e-10 68.6 39 89.7
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 2.0e-10 68.6 39 89.7
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 2.6e-10 68.2 38 92.1
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 2.6e-10 68.2 38 92.1
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 2.6e-10 68.2 39 89.7
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-10 68.2 39 89.7
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-10 68.2 39 89.7
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-10 68.2 39 89.7
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-10 68.2 39 89.7
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 2.6e-10 68.2 38 92.1
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 2.6e-10 68.2 39 89.7
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 3.3e-10 67.8 40 85.0
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 3.3e-10 67.8 42 83.3
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 5.7e-10 67.0 38 89.5
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 5.7e-10 67.0 37 91.9
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 7.4e-10 66.6 40 85.0
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 7.4e-10 66.6 40 85.0
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 7.4e-10 66.6 38 89.5
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 7.4e-10 66.6 40 85.0
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 7.4e-10 66.6 40 87.5
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 7.4e-10 66.6 40 85.0
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 9.7e-10 66.2 40 85.0
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 9.7e-10 66.2 40 85.0
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 9.7e-10 66.2 37 89.2
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 1.3e-09 65.9 38 89.5
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 1.7e-09 65.5 38 89.5
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 1.7e-09 65.5 40 82.5
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 1.7e-09 65.5 37 89.2
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 1.7e-09 65.5 40 82.5
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 1.7e-09 65.5 37 89.2
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 2.2e-09 65.1 40 85.0
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.8e-09 64.7 37 89.2
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 2.8e-09 64.7 38 86.8
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 2.8e-09 64.7 38 86.8
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 2.8e-09 64.7 38 86.8
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 2.8e-09 64.7 37 89.2
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 2.8e-09 64.7 37 89.2
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 4.8e-09 63.9 38 84.2
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 4.8e-09 63.9 36 88.9
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 4.8e-09 63.9 37 83.8
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 6.3e-09 63.5 37 86.5
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 6.3e-09 63.5 37 86.5
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 8.2e-09 63.2 38 84.2
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 4.1e-08 60.8 37 83.8
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 9.1e-08 59.7 36 80.6
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 1.2e-07 59.3 60 55.0
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.2e-07 59.3 60 55.0
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 2.2e-06 55.1 43 62.8


User provided reference genes

Program Settings