Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 4.7e-106 387.9 196 100.0
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 3.6e-66 255.4 138 88.4
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 4.0e-57 225.3 187 66.3
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.9e-57 224.2 162 72.8
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 8.9e-57 224.2 146 78.1
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 2.0e-56 223.0 195 66.2
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 2.0e-56 223.0 177 68.4
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.6e-56 222.6 177 67.8
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 5.8e-56 221.5 185 67.0
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 9.9e-56 220.7 197 64.0
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 2.2e-55 219.5 197 64.0
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 2.2e-55 219.5 145 78.6
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 2.9e-55 219.2 172 67.4
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 4.9e-55 218.4 188 62.2
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 7.1e-54 214.5 142 75.4
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.6e-53 213.4 140 78.6
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 4.6e-53 211.8 194 62.4
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 6.0e-53 211.5 188 66.5
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.0e-53 211.5 156 66.7
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.3e-52 210.3 163 67.5
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 1.3e-52 210.3 209 58.4
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 1.7e-52 209.9 166 69.9
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 1.7e-52 209.9 189 64.0
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.7e-52 209.9 138 78.3
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 2.3e-52 209.5 147 72.1
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 3.0e-52 209.1 147 72.1
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 3.9e-52 208.8 178 66.3
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 3.9e-52 208.8 181 63.5
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 5.1e-52 208.4 156 65.4
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 8.7e-52 207.6 147 71.4
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 3.3e-51 205.7 182 61.0
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 4.3e-51 205.3 122 81.1
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 7.3e-51 204.5 184 59.8
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 9.6e-51 204.1 167 68.3
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 9.6e-51 204.1 156 69.2
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 1.6e-50 203.4 172 64.5
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 2.8e-50 202.6 143 72.7
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 4.7e-50 201.8 177 60.5
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 6.2e-50 201.4 189 60.3
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 8.1e-50 201.1 144 72.2
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 8.1e-50 201.1 142 72.5
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 1.4e-49 200.3 168 66.1
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 1.8e-49 199.9 186 57.0
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 1.8e-49 199.9 186 57.0
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.8e-49 199.9 182 62.1
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 1.8e-49 199.9 122 77.9
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.8e-49 199.9 145 72.4
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 3.1e-49 199.1 126 77.8
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 4.0e-49 198.7 189 56.1
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 4.0e-49 198.7 189 56.1
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 4.0e-49 198.7 189 56.1
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 4.0e-49 198.7 159 65.4
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 5.3e-49 198.4 153 66.7
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 5.3e-49 198.4 182 61.0
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 6.9e-49 198.0 110 86.4
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 9.0e-49 197.6 197 58.9
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 1.2e-48 197.2 189 56.1
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 2.0e-48 196.4 167 62.3
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 2.6e-48 196.1 189 60.3
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 3.4e-48 195.7 142 68.3
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.4e-48 195.7 152 65.1
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 4.4e-48 195.3 110 84.5
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 4.4e-48 195.3 106 86.8
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.4e-48 195.3 177 63.3
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.3e-47 193.7 156 61.5
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 2.9e-47 192.6 128 73.4
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 2.9e-47 192.6 105 86.7
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.9e-47 192.6 139 71.9
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 4.9e-47 191.8 174 59.2
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 6.4e-47 191.4 129 71.3
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 8.4e-47 191.0 134 71.6
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 1.4e-46 190.3 104 82.7
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 3.2e-46 189.1 183 57.4
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.2e-46 189.1 183 59.6
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 4.2e-46 188.7 144 66.0
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 5.4e-46 188.3 187 56.1
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 5.4e-46 188.3 185 60.0
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 7.1e-46 188.0 158 63.3
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 9.3e-46 187.6 186 59.1
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 6.0e-45 184.9 186 57.0
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 6.0e-45 184.9 96 87.5
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 6.9e-41 171.4 123 66.7
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.0e-40 169.9 189 51.3
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 9.9e-40 167.5 191 49.7
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 1.3e-39 167.2 103 71.8
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 1.7e-39 166.8 92 88.0
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 4.2e-38 162.2 162 58.0
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 2.1e-37 159.8 134 64.9
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 2.7e-37 159.5 97 78.4
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.6e-37 158.7 177 55.9
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.0e-36 157.5 110 73.6
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 5.1e-36 155.2 141 61.0
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 8.7e-36 154.5 167 55.1
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.5e-35 153.7 192 51.0
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 5.6e-35 151.8 78 88.5
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 3.7e-34 149.1 142 57.7
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 4.0e-33 145.6 114 64.9
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 1.2e-32 144.1 77 84.4
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 5.8e-32 141.7 82 87.8
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.5e-27 126.3 94 59.6
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.6e-27 125.2 130 51.5
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.4e-25 119.8 138 46.4
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 5.3e-25 118.6 147 48.3
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 5.8e-24 115.2 91 56.0
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.2e-23 113.2 154 39.6
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 2.9e-23 112.8 135 54.1
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 6.5e-23 111.7 101 62.4
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.9e-22 110.2 72 73.6
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 9.3e-22 107.8 56 89.3
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 6.0e-21 105.1 85 60.0
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.9e-21 104.8 87 66.7
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.9e-21 104.8 87 66.7
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.9e-21 104.8 87 66.7
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.9e-21 104.8 87 66.7
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 1.8e-20 103.6 53 90.6
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 3.0e-20 102.8 49 87.8
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.1e-17 94.4 85 60.0
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.8e-17 93.6 52 80.8
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 4.2e-14 82.4 134 38.8
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-14 81.6 52 67.3
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 1.4e-12 77.4 68 69.1
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 4.3e-11 72.4 68 60.3
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 5.7e-11 72.0 49 73.5
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 2.6e-08 63.2 81 49.4
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 2.6e-08 63.2 81 49.4
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 3.4e-08 62.8 111 45.0
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 4.5e-08 62.4 122 44.3
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 5.9e-08 62.0 61 60.7
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.9e-06 57.0 40 70.0
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 3.2e-06 56.2 37 78.4
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 3.2e-06 56.2 37 78.4
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 3.2e-06 56.2 37 78.4
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 3.2e-06 56.2 37 78.4
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 3.2e-06 56.2 37 78.4
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 3.2e-06 56.2 100 45.0
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 4.2e-06 55.8 37 75.7
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 9.4e-06 54.7 44 65.9


User provided reference genes

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