Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 1.3e-127 461.5 778 100.0
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 2.1e-85 321.2 207 75.8
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 2.9e-74 284.3 183 95.6
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 1.4e-57 228.8 202 57.9
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 2.1e-56 224.9 207 55.1
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 1.1e-54 219.2 204 54.4
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 6.3e-53 213.4 207 52.7
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.4e-52 212.2 207 52.2
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 2.4e-52 211.5 207 51.7
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 5.3e-52 210.3 207 51.7
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 1.2e-51 209.1 201 53.2
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 1.0e-50 206.1 206 54.9
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 1.0e-50 206.1 206 53.4
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 1.4e-49 202.2 207 48.8
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 5.5e-49 200.3 207 50.2
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 7.2e-49 199.9 211 51.7
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 7.2e-49 199.9 207 53.1
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 3.6e-48 197.6 208 49.5
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 2.3e-47 194.9 201 49.3
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 8.8e-47 193.0 191 52.9
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 2.0e-46 191.8 205 49.3
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 5.7e-46 190.3 211 48.3
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 2.2e-45 188.3 192 51.6
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 8.2e-45 186.4 208 48.6
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 1.4e-44 185.7 207 47.8
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 3.1e-44 184.5 199 46.2
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 9.1e-44 183.0 207 46.9
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 1.2e-43 182.6 193 49.2
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.5e-43 180.6 207 46.4
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 4.5e-43 180.6 205 48.3
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 5.9e-43 180.3 207 46.4
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 1.3e-42 179.1 205 45.4
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 1.3e-42 179.1 204 50.0
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.7e-42 178.7 207 45.9
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 2.9e-42 177.9 199 45.2
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 6.5e-42 176.8 202 44.6
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 6.5e-42 176.8 207 47.3
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 1.9e-41 175.3 171 50.3
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 1.6e-40 172.2 208 46.2
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 2.7e-40 171.4 208 46.6
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 3.9e-39 167.5 139 56.8
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 8.8e-39 166.4 210 44.3
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 2.6e-38 164.9 210 44.8
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 4.4e-38 164.1 211 41.2
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 2.8e-37 161.4 213 45.1
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 8.2e-37 159.8 198 44.9
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 1.8e-36 158.7 158 48.7
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.8e-36 158.7 138 55.8
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 3.1e-36 157.9 211 40.3
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 5.3e-36 157.1 203 45.3
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 5.3e-36 157.1 210 41.0
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 2.6e-35 154.8 204 43.1
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 1.0e-34 152.9 203 41.4
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.7e-34 152.1 204 40.7
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 1.7e-34 152.1 214 42.5
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 3.8e-34 151.0 211 38.9
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 3.8e-34 151.0 211 38.9
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 6.5e-34 150.2 210 39.5
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 3.2e-33 147.9 203 39.4
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 5.5e-33 147.1 203 39.4
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 7.2e-33 146.7 209 40.2
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 1.2e-32 146.0 212 39.6
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 1.2e-32 146.0 212 39.6
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 1.2e-32 146.0 210 39.0
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 2.1e-32 145.2 210 39.5
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 4.7e-32 144.1 209 39.7
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 1.8e-31 142.1 199 40.7
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.8e-31 142.1 204 41.2
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 2.3e-31 141.7 204 40.7
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 5.2e-31 140.6 202 41.6
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.1e-30 139.4 159 44.0
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.1e-30 139.4 201 38.3
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.5e-30 139.0 158 44.3
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.5e-30 139.0 158 44.3
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 1.7e-29 135.6 212 37.7
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 1.7e-29 135.6 212 37.7
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 6.3e-29 133.7 212 37.3
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 1.6e-27 129.0 203 37.4
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.9e-27 127.1 145 46.2
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-26 125.2 203 39.4
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.8e-26 124.4 205 36.6
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 9.4e-25 119.8 202 38.1
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 2.7e-24 118.2 83 63.9
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 2.7e-24 118.2 207 35.7
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 6.1e-24 117.1 210 36.7
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 4.0e-23 114.4 80 66.2
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 6.8e-23 113.6 171 43.9
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 8.8e-23 113.2 169 45.0
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 4.4e-22 110.9 212 34.4
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 2.8e-21 108.2 118 47.5
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 2.7e-19 101.7 204 34.3
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-18 98.6 89 51.7
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 3.8e-18 97.8 152 35.5
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 1.9e-17 95.5 79 58.2
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 1.9e-17 95.5 84 54.8
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 7.2e-17 93.6 83 54.2
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 2.3e-15 88.6 85 49.4
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 4.0e-15 87.8 69 58.0
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 1.5e-14 85.9 84 50.0
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.6e-14 85.1 67 61.2
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 9.8e-14 83.2 82 47.6
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.2e-13 82.0 90 48.9
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 4.8e-13 80.9 74 50.0
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 4.8e-13 80.9 74 50.0
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.8e-12 79.0 67 55.2
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 3.1e-12 78.2 188 34.0
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 3.5e-11 74.7 191 30.4
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 3.8e-10 71.2 65 49.2
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 8.6e-10 70.1 199 27.1
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 1.5e-09 69.3 71 47.9
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 2.5e-09 68.6 194 30.9
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.6e-08 65.9 61 55.7
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 2.1e-08 65.5 211 28.4
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 8.0e-08 63.5 64 56.2
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.4e-07 62.8 127 33.9
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.8e-07 62.4 189 25.9
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.0e-07 61.6 193 23.3
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 3.0e-07 61.6 193 23.3
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 4.0e-07 61.2 207 27.1
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 4.0e-07 61.2 186 26.3
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 5.2e-07 60.8 177 26.6
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 8.9e-07 60.1 217 29.5
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.2e-06 59.7 127 33.1
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 2.0e-06 58.9 185 25.9
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 3.4e-06 58.2 179 23.5
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 4.4e-06 57.8 208 27.9
Thecc.02G296100 Theobroma cacao HOM05D007496 ORTHO05D009479 4.4e-06 57.8 132 31.1
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 5.7e-06 57.4 202 26.2
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 5.7e-06 57.4 210 28.6
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 5.7e-06 57.4 199 23.6
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 7.5e-06 57.0 196 23.0
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 9.8e-06 56.6 199 25.1
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 9.8e-06 56.6 210 28.1
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 9.8e-06 56.6 82 40.2


User provided reference genes

Program Settings