Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 9.9e-138 493.4 246 100.0
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.9e-117 426.0 246 86.6
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.3e-109 398.7 246 81.3
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.6e-103 379.8 189 100.0
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 4.2e-88 328.6 246 67.9
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 1.0e-86 323.9 248 68.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.0e-86 323.9 246 65.4
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.0e-86 323.9 248 69.8
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.4e-86 323.6 246 68.7
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.8e-86 323.2 252 67.9
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 2.0e-85 319.7 248 68.1
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 2.6e-85 319.3 249 69.1
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 3.3e-85 318.9 247 67.6
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 5.7e-85 318.2 197 79.2
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 5.7e-85 318.2 249 67.9
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 5.7e-85 318.2 246 67.9
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 7.5e-85 317.8 196 79.1
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 9.7e-85 317.4 247 67.2
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.7e-84 316.6 248 67.3
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 2.2e-84 316.2 246 66.3
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.8e-84 315.8 249 65.5
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 2.8e-84 315.8 246 65.4
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.8e-84 315.8 246 65.4
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.8e-84 315.8 246 65.4
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.8e-84 315.8 246 66.7
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.7e-84 315.5 249 66.7
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 3.7e-84 315.5 249 66.7
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.7e-84 315.5 246 66.7
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 4.8e-84 315.1 249 67.1
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 4.8e-84 315.1 246 66.7
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 6.3e-84 314.7 249 67.9
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 1.4e-83 313.5 247 65.6
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.4e-83 313.5 248 66.5
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.4e-83 312.8 246 64.6
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.4e-83 312.8 252 64.3
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.4e-83 312.8 228 69.3
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 3.1e-83 312.4 246 66.7
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 4.1e-83 312.0 250 66.8
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.3e-83 311.6 247 65.6
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.0e-83 311.2 246 65.0
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.2e-82 310.5 252 63.9
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.6e-82 310.1 252 66.3
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 3.5e-82 308.9 251 64.5
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 5.9e-82 308.1 258 63.6
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 7.7e-82 307.8 248 63.3
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 7.7e-82 307.8 248 65.7
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 7.7e-82 307.8 194 77.3
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.0e-81 307.4 231 67.5
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.7e-81 306.6 194 76.3
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 3.8e-81 305.4 247 66.4
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 6.5e-81 304.7 252 64.3
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 6.5e-81 304.7 230 67.8
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 6.5e-81 304.7 247 66.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 6.5e-81 304.7 247 65.2
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 8.5e-81 304.3 247 65.6
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.1e-80 303.9 249 64.7
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 2.5e-80 302.8 248 65.3
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.5e-80 302.8 246 64.6
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.5e-80 302.8 246 64.6
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.5e-80 302.8 217 71.4
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.2e-80 301.2 257 63.8
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.2e-80 301.2 194 74.2
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 9.4e-80 300.8 246 63.4
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 9.4e-80 300.8 247 64.8
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.2e-79 300.4 249 63.1
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.6e-79 300.1 248 67.3
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 2.7e-79 299.3 248 63.7
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 4.7e-79 298.5 254 63.8
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.8e-78 296.6 246 63.0
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.8e-78 296.6 194 75.3
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 2.3e-78 296.2 233 65.7
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 3.0e-78 295.8 253 63.2
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 4.0e-78 295.4 204 72.1
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 4.0e-78 295.4 248 66.5
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 6.8e-78 294.7 197 74.1
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 8.8e-78 294.3 249 64.7
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 8.8e-78 294.3 246 63.4
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.2e-77 293.9 249 65.1
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 2.6e-77 292.7 247 64.8
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 2.6e-77 292.7 194 74.7
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.6e-77 292.7 186 76.3
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 3.4e-77 292.4 233 65.2
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 7.5e-77 291.2 248 64.5
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 9.8e-77 290.8 252 63.1
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.3e-76 290.4 258 62.0
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 2.8e-76 289.3 246 63.8
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 8.3e-76 287.7 249 63.5
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 8.3e-76 287.7 254 62.6
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.4e-75 287.0 249 64.3
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 3.1e-75 285.8 257 61.9
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 9.1e-75 284.3 195 75.9
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 9.1e-75 284.3 248 62.5
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 9.1e-75 284.3 195 69.7
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.2e-74 283.9 246 61.0
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 1.6e-74 283.5 231 63.2
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.2e-73 279.6 232 61.6
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 2.9e-73 279.3 249 62.7
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 2.9e-73 279.3 251 62.9
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 5.0e-73 278.5 250 63.2
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 5.0e-73 278.5 250 63.2
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 8.5e-73 277.7 194 71.6
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 1.1e-72 277.3 248 62.1
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.9e-72 276.6 194 70.6
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 2.5e-72 276.2 253 61.7
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 4.2e-72 275.4 205 67.8
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.2e-71 273.9 192 69.3
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 6.1e-71 271.6 194 72.7
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 5.2e-70 268.5 246 59.8
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 6.8e-70 268.1 252 60.3
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 2.0e-69 266.5 237 59.1
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 2.4e-67 259.6 220 61.8
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 3.1e-67 259.2 169 76.3
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.5e-66 255.8 204 64.7
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.9e-66 255.0 191 66.0
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 5.2e-62 241.9 193 63.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 4.4e-53 212.2 121 81.8
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 6.0e-50 201.8 186 57.5
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 7.8e-50 201.4 121 80.2
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.0e-49 201.1 122 77.9
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 7.5e-45 184.9 212 44.3
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.3e-44 184.1 180 53.9
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.7e-44 183.7 112 78.6
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 6.0e-42 175.3 165 58.2
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 7.8e-42 174.9 141 55.3
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 3.3e-40 169.5 185 45.9
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 7.6e-37 158.3 151 49.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.6e-34 149.1 174 46.0
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.4e-27 126.7 174 37.4
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 4.0e-22 109.4 69 73.9
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 2.3e-17 93.6 120 50.0
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 8.1e-15 85.1 141 32.6
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.4e-13 79.7 124 41.9
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 5.8e-13 79.0 105 47.6
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 4.9e-12 75.9 67 64.2
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 4.9e-12 75.9 157 33.1


User provided reference genes

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