Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 6.8e-168 594.0 309 100.0
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.7e-147 526.2 309 87.4
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 8.6e-147 523.9 312 87.2
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.2e-129 466.8 312 76.9
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.4e-128 462.6 311 77.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.4e-128 462.6 310 76.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.4e-127 458.8 307 75.9
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 7.6e-127 457.6 313 74.8
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.2e-126 456.1 312 73.7
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.2e-125 451.8 312 73.7
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 5.4e-125 451.4 304 77.3
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.2e-124 450.3 311 73.3
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.7e-124 449.1 302 75.5
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.6e-124 448.4 309 72.5
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.0e-124 448.0 309 74.4
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.0e-124 448.0 309 74.4
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.3e-123 446.8 309 72.2
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.3e-123 446.8 304 75.0
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.7e-123 446.4 312 72.8
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.0e-123 445.7 304 74.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.6e-123 444.5 309 74.1
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.7e-123 444.1 312 73.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-122 443.7 309 73.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.1e-122 443.7 312 73.7
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.1e-122 443.7 309 71.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.5e-122 442.6 312 72.4
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.6e-122 441.4 312 72.8
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 5.6e-122 441.4 312 72.8
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 7.3e-122 441.0 312 73.1
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.3e-122 441.0 309 73.5
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.6e-122 440.7 305 73.8
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 9.6e-122 440.7 315 72.7
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.6e-121 439.9 315 73.7
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.1e-121 439.5 309 73.1
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.8e-121 439.1 311 72.7
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.8e-121 439.1 312 73.1
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.1e-120 437.2 312 73.1
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.4e-120 436.0 303 74.6
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 3.1e-120 435.6 308 72.1
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.3e-120 434.9 305 73.1
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.5e-119 433.3 312 71.8
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 2.6e-119 432.6 300 73.3
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 2.6e-119 432.6 309 71.2
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.4e-119 432.2 303 73.9
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 5.8e-119 431.4 306 70.6
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 5.8e-119 431.4 308 70.1
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 9.9e-119 430.6 310 71.6
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.9e-119 430.6 311 73.6
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 9.9e-119 430.6 312 71.8
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.3e-118 430.3 308 70.8
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.7e-118 429.9 314 71.3
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 2.9e-118 429.1 303 72.6
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.9e-118 429.1 312 71.5
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 3.8e-118 428.7 303 71.3
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 4.9e-118 428.3 312 71.2
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 6.4e-118 427.9 309 71.2
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.1e-117 427.2 307 72.0
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.4e-117 426.8 315 71.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.9e-117 426.4 302 72.8
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 3.2e-117 425.6 308 68.8
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.2e-117 425.6 315 70.8
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 9.3e-117 424.1 311 71.7
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.2e-116 423.7 308 68.8
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-116 423.3 311 71.4
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 2.7e-116 422.5 309 68.9
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 3.5e-116 422.2 312 71.5
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.0e-115 420.6 312 71.5
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.3e-115 420.2 309 68.3
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.7e-115 419.9 308 70.8
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.3e-115 419.5 312 70.5
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 3.9e-115 418.7 347 65.1
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 6.6e-115 417.9 390 59.5
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 6.6e-115 417.9 313 69.3
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.1e-114 417.2 309 68.6
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 3.3e-114 415.6 309 68.0
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 3.3e-114 415.6 301 70.4
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.3e-114 415.6 272 74.6
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 7.3e-114 414.5 309 68.3
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 7.3e-114 414.5 309 67.6
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 7.3e-114 414.5 309 69.3
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 9.6e-114 414.1 306 68.3
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.6e-113 413.3 309 68.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.6e-113 413.3 309 66.7
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.6e-113 413.3 308 67.9
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 2.1e-113 412.9 301 68.8
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.1e-113 412.9 349 64.5
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 2.1e-113 412.9 309 68.3
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.6e-113 412.1 314 67.5
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.4e-112 410.2 309 68.0
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.4e-112 410.2 312 67.9
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-112 410.2 309 69.6
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-112 410.2 306 67.6
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.8e-112 409.8 298 68.5
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.8e-112 409.8 304 70.1
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.0e-112 408.7 309 67.0
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 9.0e-112 407.5 306 69.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 2.6e-111 406.0 301 68.1
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 2.6e-111 406.0 343 64.1
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.5e-111 405.2 262 77.9
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 5.8e-111 404.8 300 69.7
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 5.8e-111 404.8 291 70.1
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.7e-110 403.3 299 69.9
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.9e-110 402.5 353 60.3
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 3.8e-110 402.1 305 68.2
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.9e-110 401.7 296 69.6
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 6.4e-110 401.4 281 71.2
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.1e-109 400.6 285 70.9
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.1e-109 400.6 289 67.8
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.4e-109 400.2 281 72.6
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.9e-109 399.8 313 66.8
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 4.2e-109 398.7 350 61.7
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 5.4e-109 398.3 308 67.9
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 4.6e-108 395.2 313 66.5
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 7.9e-108 394.4 299 68.2
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 4.3e-106 388.7 265 72.1
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 4.3e-106 388.7 292 66.8
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.8e-105 386.0 272 72.1
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 6.2e-105 384.8 313 64.5
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.1e-105 384.4 260 74.6
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 9.0e-104 380.9 275 68.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.9e-102 375.9 302 62.9
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.2e-100 370.5 311 62.1
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 6.0e-100 368.2 307 61.6
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.0e-99 367.5 311 62.1
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.3e-99 366.3 303 63.4
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 6.7e-99 364.8 309 63.4
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.5e-95 353.6 289 62.3
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.3e-91 339.7 229 73.8
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 5.1e-91 338.6 270 61.5
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.5e-86 321.6 232 72.0
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 7.2e-85 318.2 291 54.0
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 9.4e-85 317.8 280 57.5
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 8.8e-83 311.2 289 54.7
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 7.7e-79 298.1 277 57.0
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-78 297.4 307 52.1
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-78 297.4 306 53.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 9.4e-77 291.2 286 53.5
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.0e-75 287.7 272 57.7
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 5.1e-75 285.4 281 54.1
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 5.7e-74 282.0 277 51.6
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.3e-73 280.8 277 51.3
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.4e-72 277.3 298 54.4
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.2e-71 274.2 192 74.0
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.2e-71 274.2 247 58.3
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-65 253.8 204 65.7
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.1e-64 248.1 238 54.6
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-61 241.1 328 47.6
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.5e-61 240.7 198 66.2
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 5.2e-59 232.3 217 59.9
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.1e-56 224.6 148 73.6
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 7.0e-56 221.9 217 53.0
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 9.1e-56 221.5 186 62.9
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.3e-54 217.6 221 50.7
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 8.3e-49 198.4 152 68.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 2.0e-42 177.2 283 36.4
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.4e-42 176.4 154 60.4
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 5.4e-32 142.5 279 34.4
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.4e-27 127.9 314 29.9
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.0e-26 124.0 108 63.0
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 2.1e-23 114.0 224 33.5
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 4.6e-23 112.8 114 55.3
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.1e-22 109.4 76 73.7
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 4.7e-20 102.8 262 29.8
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.8e-19 100.9 285 27.7
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 2.9e-17 93.6 131 45.8
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.1e-14 82.8 186 37.6
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 8.9e-11 72.0 56 58.9
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 1.2e-07 61.6 43 62.8


User provided reference genes

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