Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 6.7e-54 214.2 141 100.0
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 2.6e-34 149.1 78 94.9
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 3.3e-21 105.5 61 85.2
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.4e-19 100.1 52 92.3
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 6.1e-15 84.7 51 80.4
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 4.4e-13 78.6 52 69.2
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 7.4e-13 77.8 54 66.7
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 7.7e-10 67.8 52 63.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.3e-09 67.0 43 72.1
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.3e-09 67.0 46 65.2
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 2.2e-09 66.2 51 56.9
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.2e-09 66.2 52 61.5
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.9e-09 65.9 51 62.7
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.9e-09 65.9 48 62.5
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 5.0e-09 65.1 52 59.6
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 5.0e-09 65.1 67 49.3
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.5e-09 64.7 47 63.8
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 8.5e-09 64.3 51 60.8
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 1.1e-08 63.9 51 60.8
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.1e-08 63.9 51 58.8
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-08 63.9 47 61.7
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.5e-08 63.5 51 60.8
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.9e-08 63.2 48 62.5
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.9e-08 63.2 47 59.6
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 2.5e-08 62.8 52 59.6
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 2.5e-08 62.8 52 59.6
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 2.5e-08 62.8 55 54.5
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.5e-08 62.8 54 55.6
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.5e-08 62.8 51 56.9
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 3.2e-08 62.4 50 60.0
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 3.2e-08 62.4 50 60.0
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 3.2e-08 62.4 50 60.0
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.2e-08 62.4 47 55.3
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 4.2e-08 62.0 49 55.1
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.2e-08 62.0 51 56.9
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 4.2e-08 62.0 51 56.9
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 5.5e-08 61.6 54 53.7
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 5.5e-08 61.6 52 57.7
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.5e-08 61.6 51 56.9
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 5.5e-08 61.6 51 56.9
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 5.5e-08 61.6 50 60.0
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 5.5e-08 61.6 45 62.2
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 5.5e-08 61.6 46 58.7
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 7.2e-08 61.2 48 60.4
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 7.2e-08 61.2 51 52.9
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 7.2e-08 61.2 67 44.8
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 9.4e-08 60.8 64 50.0
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 9.4e-08 60.8 48 62.5
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.2e-07 60.5 50 56.0
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.2e-07 60.5 52 57.7
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.2e-07 60.5 51 54.9
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.6e-07 60.1 50 58.0
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.6e-07 60.1 52 55.8
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.6e-07 60.1 50 60.0
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.1e-07 59.7 47 55.3
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 2.1e-07 59.7 48 56.2
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 2.1e-07 59.7 50 54.0
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.7e-07 59.3 50 56.0
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.7e-07 59.3 49 53.1
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.7e-07 59.3 49 53.1
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.7e-07 59.3 50 58.0
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 2.7e-07 59.3 47 59.6
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 2.7e-07 59.3 47 59.6
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.7e-07 59.3 47 57.4
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 2.7e-07 59.3 44 59.1
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 2.7e-07 59.3 45 57.8
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 3.6e-07 58.9 51 52.9
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 3.6e-07 58.9 52 53.8
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.7e-07 58.5 52 55.8
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 4.7e-07 58.5 52 55.8
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 8.0e-07 57.8 47 57.4
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 8.0e-07 57.8 53 50.9
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 8.0e-07 57.8 47 57.4
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 8.0e-07 57.8 47 57.4
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 8.0e-07 57.8 45 55.6
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 8.0e-07 57.8 45 57.8
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.0e-06 57.4 46 56.5
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.0e-06 57.4 39 69.2
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.0e-06 57.4 50 48.0
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.4e-06 57.0 45 57.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.8e-06 56.6 47 57.4
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.8e-06 56.6 47 55.3
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.3e-06 56.2 45 55.6
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.3e-06 56.2 45 53.3
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.3e-06 56.2 45 53.3
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 3.0e-06 55.8 45 53.3
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 3.0e-06 55.8 45 51.1
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 4.0e-06 55.5 52 53.8
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.0e-06 55.5 47 57.4
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.0e-06 55.5 45 57.8
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 4.0e-06 55.5 48 54.2
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 5.2e-06 55.1 50 52.0
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 6.7e-06 54.7 50 52.0
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 6.7e-06 54.7 45 55.6


User provided reference genes

Program Settings