Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 7.6e-191 670.2 316 100.0
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 1.0e-174 616.7 313 92.0
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 1.6e-164 582.8 312 88.1
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 2.1e-164 582.4 310 87.7
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 2.7e-164 582.0 306 89.5
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 4.6e-164 581.3 306 88.2
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 3.0e-163 578.6 310 87.7
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 5.1e-163 577.8 316 84.8
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 6.7e-163 577.4 316 84.8
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 2.0e-162 575.9 308 87.0
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 7.4e-162 573.9 309 86.4
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 7.4e-162 573.9 308 86.4
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.2e-161 572.4 308 86.7
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 2.8e-161 572.0 305 86.6
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 8.2e-161 570.5 309 86.1
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.4e-160 569.7 311 85.9
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 1.8e-160 569.3 305 85.9
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 4.1e-160 568.2 306 86.6
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 1.2e-159 566.6 305 85.9
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 1.5e-159 566.2 305 86.6
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 2.6e-159 565.5 308 85.1
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 7.7e-159 563.9 308 84.4
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 2.9e-158 562.0 305 85.2
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 2.9e-158 562.0 309 84.8
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 5.0e-158 561.2 311 84.9
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 1.9e-157 559.3 310 83.5
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.5e-157 558.9 302 85.4
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 3.2e-157 558.5 310 83.5
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.2e-156 556.6 309 83.8
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 1.6e-156 556.2 310 84.5
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.7e-156 555.4 309 84.5
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 3.6e-156 555.1 305 84.3
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 4.7e-156 554.7 307 84.4
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 7.9e-156 553.9 309 83.2
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 1.4e-155 553.1 309 83.2
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 1.8e-155 552.7 304 84.5
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 6.7e-155 550.8 305 84.9
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.1e-154 550.1 308 84.1
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 1.1e-154 550.1 307 83.7
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 4.4e-154 548.1 308 83.4
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 5.7e-154 547.7 305 83.3
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 4.8e-153 544.7 308 83.8
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 1.1e-152 543.5 303 83.2
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 1.8e-152 542.7 298 85.2
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 5.3e-152 541.2 306 83.0
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 5.3e-152 541.2 304 82.2
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 9.1e-152 540.4 308 82.1
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 3.5e-151 538.5 310 82.9
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 7.7e-151 537.3 304 81.9
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 7.7e-151 537.3 299 83.6
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 1.0e-150 537.0 304 81.2
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 2.2e-150 535.8 303 81.5
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 2.9e-150 535.4 306 80.4
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.1e-149 533.5 309 82.2
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 1.4e-149 533.1 308 81.5
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 2.5e-149 532.3 309 80.3
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 2.5e-149 532.3 309 80.3
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 2.5e-149 532.3 309 80.3
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 5.5e-149 531.2 309 79.9
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 7.2e-149 530.8 304 80.9
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 2.1e-148 529.3 309 79.9
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 2.7e-148 528.9 306 79.1
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 4.7e-148 528.1 303 79.9
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 1.8e-147 526.2 308 80.2
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 3.0e-147 525.4 312 79.2
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 6.7e-147 524.2 407 65.6
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 5.7e-146 521.2 295 82.7
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 6.3e-145 517.7 357 70.6
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 1.1e-136 490.3 308 74.4
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 2.2e-134 482.6 266 85.3
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 5.0e-134 481.5 273 83.2
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 6.5e-134 481.1 263 85.9
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 1.9e-133 479.6 292 77.1
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 2.6e-130 469.2 302 73.5
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 1.2e-127 460.3 326 68.4
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 3.3e-125 452.2 307 70.4
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 1.5e-122 443.4 258 80.6
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 4.1e-120 435.3 307 69.1
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 3.3e-117 425.6 244 81.6
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 6.8e-115 417.9 302 61.9
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 7.0e-112 407.9 341 60.7
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 4.6e-103 378.6 280 67.9
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 9.5e-101 370.9 310 61.9
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 7.3e-93 344.7 189 84.1
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 1.8e-91 340.1 185 84.3
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 3.8e-89 332.4 162 93.2
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 2.4e-88 329.7 166 90.4
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 3.2e-88 329.3 166 89.8
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 7.1e-88 328.2 165 89.7
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 4.6e-87 325.5 166 88.6
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 7.8e-87 324.7 163 89.6
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 7.8e-87 324.7 167 89.8
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 6.6e-86 321.6 160 91.9
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.5e-85 320.5 166 87.3
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 4.3e-85 318.9 161 90.7
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 5.6e-85 318.5 162 90.1
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 9.6e-85 317.8 162 88.3
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 9.6e-85 317.8 166 87.3
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 2.8e-84 316.2 168 87.5
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 5.8e-82 308.5 186 80.1
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 2.1e-79 300.1 249 56.6
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 5.1e-78 295.4 180 77.2
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 1.0e-70 271.2 141 88.7
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 1.8e-62 243.8 130 86.2
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 6.2e-60 235.3 126 86.5
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 6.2e-60 235.3 126 86.5
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 6.9e-59 231.9 128 83.6
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 2.6e-58 229.9 126 84.9
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 1.0e-57 228.0 126 84.9
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 1.7e-57 227.3 125 83.2
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 3.8e-57 226.1 122 82.0
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 5.0e-57 225.7 125 81.6
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 5.5e-56 222.2 125 80.0
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 1.2e-55 221.1 125 80.0
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 6.1e-55 218.8 136 77.2
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 6.1e-55 218.8 136 77.2
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 9.7e-53 211.5 128 75.0
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 9.7e-53 211.5 127 80.3
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 6.3e-52 208.8 109 88.1
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 1.0e-49 201.4 148 68.2
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 2.9e-49 199.9 117 77.8
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.6e-47 194.1 101 85.1
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 1.5e-34 151.0 85 84.7
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 5.0e-33 146.0 69 95.7
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 8.5e-33 145.2 242 38.0
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 8.5e-33 145.2 89 69.7
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 2.8e-28 130.2 69 88.4
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 6.3e-28 129.0 77 77.9
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.4e-22 111.3 71 76.1
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 2.7e-18 97.1 85 58.8
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 1.8e-14 84.3 46 80.4
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 1.8e-14 84.3 93 50.5
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 9.1e-11 72.0 46 76.1
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 2.7e-10 70.5 41 75.6
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 5.9e-10 69.3 40 75.0


User provided reference genes

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